Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0570 ATGGAAGGACCCAAAGATGTTCATGTTTTGGCCGTCGATGATAGCTTCGTTGATCGTAAGGTCATTGAACGCTTGCTCAAAATCTCATCTTGCAAAGTTACTGCTGTTGATAGTGGAACCAGAGCACTACAATTCCTGGGACTGGATGAGCAGAGAAGAACCTCTGATTCTGATGAAGGCTTTGTTGGTTTGAAGGTGGATCTAATTATCACAGACTACTGCATGCCAGGAATGACTGGTTATGAGTTGCTCAAGAAAATCAAGGAATCGACCACTTTCAGAGAAATTCCTGTGGTGATTATGTCTTCTGAAAACATTTTGCCTCGCATAGACAGATGTTTGGAGGAAGGTGCAGAGGATTTCATTGTGAAGCCAGTGAAGTTATCTGACGTGAAACGGTTGAAGGGATACATGAACAACAGGGATGTTAAGGTGGGAAGCCGAGGCTACGGTGGAGATGGTGACGGTGACGGAGGCGATGTTAGAATCAACAAGAGAAAGGTGTCGGATATCGTTGATATATCGTCGGCATCATCAACACCGTTTATTTTGTCGTTATTGTCACTATCGTCTATTTTATCATCATCATCGCCATCATCTATTTTTCTAATCAGCATCATTTATTTTGTGATCATCATCACCATCATGTCTTATCTCTCCTTCACCATCATCTTCCCCCATAATTATTGA 690 0.4217 MEGPKDVHVLAVDDSFVDRKVIERLLKISSCKVTAVDSGTRALQFLGLDEQRRTSDSDEGFVGLKVDLIITDYCMPGMTGYELLKKIKESTTFREIPVVIMSSENILPRIDRCLEEGAEDFIVKPVKLSDVKRLKGYMNNRDVKVGSRGYGGDGDGDGGDVRINKRKVSDIVDISSASSTPFILSLLSLSSILSSSSPSSIFLISIIYFVIIITIMSYLSFTIIFPHNY 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0570 229 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 202 IPR045279 GO:0009736
Lal16g0570 229 SMART REC_2 7 138 IPR001789 GO:0000160
Lal16g0570 229 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 4 202 - -
Lal16g0570 229 Pfam Response regulator receiver domain 9 131 IPR001789 GO:0000160
Lal16g0570 229 ProSiteProfiles Response regulatory domain profile. 8 139 IPR001789 GO:0000160
Lal16g0570 229 CDD REC_typeA_ARR 9 134 - -
Lal16g0570 229 Gene3D - 7 148 - -
Lal16g0570 229 SUPERFAMILY CheY-like 5 133 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0570 Lal-Chr16 3676099 3677865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0570 7 180 Response Regulator Gene Family AT1G59940 64.943 4.05e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal16g0570 Response_reg 1.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0570 K14492 - gmx:100787696 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0570 16 3676099 3677865 Lal16g0570 16 3676099 3677865 ECH
Lal16g0570 16 3676099 3677865 Lal23g1035 23 12135004 12137257 LSH