Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0566 ATGAAAAAGGACATAAGTGAACTTTCCTCTGCATGGGAAGGTGATAATGGAAATTCTGTGGATAAGAGGCTAAGGCTATTTGGCTTTGAGCTAAACCCATCCCAGAACAATGAGGGCTGTGTCAAAGAGCCTGTAGAAGGAGATGAAAGTGTAAATTCCACAAACTCATTTTCATCAGAAAGAGAGAAAATTGGTCAAGAGAAAAGCTCAGGCAGAGACCAAGAAGAGAGAAAGTTTGAGTGCCAATATTGTTTGAAGGAATTTGCAAACTCACAAGCATTAGGAGGCCACCAAAATGCTCACAAGAAAGAGAGAATGAAGGAAAAAAGGTTGCAGCTTCAAGCCAGAAGGGCTAGCATAAAATACTACCTACAACCCTTTCAAACCAATAACCATGGTTTTGCTTACCATGGCTCTAATACTCATTGGTTCTATGATCCCTCTTCCTATAATAATTACTCCGATTTCACCTTGTGTGAAGAATCTCAGATCAGCTTCAACTCAAATGATCAAAATACCAATTTTATTACTTCTGACAAGAGATATTCAAATTGGTATAATTCTCTGCCATCCCATGCTCCTACCCAACAAGATACTTCTTGCATGTTCACTTTCTCCAATCAAGATAATAATAGGCCTTTTATTTCCGAGCCTTACCATTTCCCTACTTCAAACCAGGGCCATAATAAAGCTTTGGATCTTCAACTAGGCCTCAACTTGGAGTCTAATACAAGAAGCCTCACTGAGAAGGGTGTAATTAATATATGA 768 0.3893 MKKDISELSSAWEGDNGNSVDKRLRLFGFELNPSQNNEGCVKEPVEGDESVNSTNSFSSEREKIGQEKSSGRDQEERKFECQYCLKEFANSQALGGHQNAHKKERMKEKRLQLQARRASIKYYLQPFQTNNHGFAYHGSNTHWFYDPSSYNNYSDFTLCEESQISFNSNDQNTNFITSDKRYSNWYNSLPSHAPTQQDTSCMFTFSNQDNNRPFISEPYHFPTSNQGHNKALDLQLGLNLESNTRSLTEKGVINI 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0566 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Lal16g0566 255 PANTHER ZINC FINGER PROTEIN 5 18 240 IPR044299 GO:0010090
Lal16g0566 255 PANTHER ZINC FINGER PROTEIN 5 18 240 - -
Lal16g0566 255 Gene3D Classic Zinc Finger 53 131 - -
Lal16g0566 255 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Lal16g0566 255 SUPERFAMILY beta-beta-alpha zinc fingers 75 106 IPR036236 -
Lal16g0566 255 Pfam C2H2-type zinc finger 79 104 - -
Lal16g0566 255 MobiDBLite consensus disorder prediction 32 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0566 Lal-Chr16 3648717 3649484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0566 8 129 C2H2 Transcription Factor Family AT1G10480 46.825 2.25e-17 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal16g0566 zf-C2H2_6 4.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0566 - - gmx:100799857 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0566 16 3648717 3649484 Lal16g0566 16 3648717 3649484 ECH