Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0565 ATGCCGGGGAATCGGTCCAAGTCGGAGAAGCACGACGGTGCGATGCAGCTCCGACGGGACCCGTATGAGGTTCTTGGCGTCTCACGCAACTCCACTGATCAGGAAATCAAAACCGCTTATCGAAAAATGGCTCTTAAATTCCATCCTGACAAGAATGCTAATGATCCTAAAGCAGCTGATATGTTTAAAGAGGCTACATTTTCTTATAATATCTTATCAGATCCTGATAAACGCCGTCAGTACGACTCAGCTGGTTTTGAGGCTGTTGAATCAGATAGCCAAGAGTTGGAGTTGGACCTTTCAAATTTGGGTGCTGTGAATACAATGTTTGCAGCTCTTTTTAGTAAACTTGGTGTTCCAATTAAGACAACTGTATCTGCAACTATTTTAGAAGAGGCACTCAATGGTGCAGTGACCATTCGTCCACTTCCATTGGGTCATTTTATATCTAAAAAGGTTGAGAAGCAATGTGCACACTTCTATTCAGTTACAATAACAGAAGAGGAAGCTCGAGCTGGATTTGTTTGTCGAGTGCAATCATCAGACAAAAGCAAGTTCAAGTTATTATATTTTGATCGGGAAGACAGTGGTGGATTAAGTCTTGCACTCCAGGAAGACAGTGCAAAAACAGGAAAGGTTAGCTCTGCTGGACTGTATTTTCTTGGGTTTCCTGTTTATCGGTTGGATCAAACATTGAACTCAATAGCTGCTGCTAAGGATCCTGATACATCATTTTTCAGAAAGCTGGATGGGTTCCAGCCATGTGAACTAACAGAATTGAAGGCTGGTACCCATGTGTTTGCTGTTTATGGTGACAACTTTTTCAAAAGTGCAAGCTATACAATAGAAGCTTTGTGTGCTGCACCTTTTACTGAAGAAAAAGAAAATTTAAGAATTATAGAATCTCAAATTTTGTCTAAAAGGGCAGAAATGTCAAAGTTTGAGACAGAATACCGAGAGGTTCTGGCGCAATTCACAGAGATGACAAGCAGATATGCGCAAGAAATGCAAGCAATTGATGAGCTGCTGAAACAAAGAAATGAAATACATGCATCATACAGTGTCGTACCTTTAAAACGGAGTTCAAGTAAGAGCAGGAGCAAAAGTTCTTCGAAGGAGGCAAAAGACGAGGACCAAACAAGAGAGAAGAGAAATATGAGAGATCGTCCAAGGAAGAAGAAATGGTATAACATCCACTTGAGAGTTGATAAGAGAAAGGCTTGCTAA 1227 0.4091 MPGNRSKSEKHDGAMQLRRDPYEVLGVSRNSTDQEIKTAYRKMALKFHPDKNANDPKAADMFKEATFSYNILSDPDKRRQYDSAGFEAVESDSQELELDLSNLGAVNTMFAALFSKLGVPIKTTVSATILEEALNGAVTIRPLPLGHFISKKVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREDSGGLSLALQEDSAKTGKVSSAGLYFLGFPVYRLDQTLNSIAAAKDPDTSFFRKLDGFQPCELTELKAGTHVFAVYGDNFFKSASYTIEALCAAPFTEEKENLRIIESQILSKRAEMSKFETEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYSVVPLKRSSSKSRSKSSSKEAKDEDQTREKRNMRDRPRKKKWYNIHLRVDKRKAC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0565 408 Gene3D DnaJ domain 4 104 IPR036869 -
Lal16g0565 408 MobiDBLite consensus disorder prediction 356 396 - -
Lal16g0565 408 SMART dnaj_3 19 77 IPR001623 -
Lal16g0565 408 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 1 407 - -
Lal16g0565 408 ProSiteProfiles dnaJ domain profile. 20 85 IPR001623 -
Lal16g0565 408 MobiDBLite consensus disorder prediction 366 385 - -
Lal16g0565 408 ProSitePatterns Nt-dnaJ domain signature. 62 81 IPR018253 -
Lal16g0565 408 MobiDBLite consensus disorder prediction 1 18 - -
Lal16g0565 408 CDD DnaJ 20 74 IPR001623 -
Lal16g0565 408 PANTHER DNAJ DOMAIN-CONTAINING PROTEIN-RELATED 1 407 - -
Lal16g0565 408 MobiDBLite consensus disorder prediction 1 21 - -
Lal16g0565 408 SUPERFAMILY Chaperone J-domain 18 89 IPR036869 -
Lal16g0565 408 Pfam DnaJ domain 20 82 IPR001623 -
Lal16g0565 408 PRINTS DnaJ domain signature 22 40 IPR001623 -
Lal16g0565 408 PRINTS DnaJ domain signature 40 55 IPR001623 -
Lal16g0565 408 PRINTS DnaJ domain signature 57 77 IPR001623 -
Lal16g0565 408 PRINTS DnaJ domain signature 77 96 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0565 Lal-Chr16 3633100 3638020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0565 18 83 C2H2 Transcription Factor Family AT1G74250 42.254 1.58e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0565 - - gmx:100800929 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0565 16 3633100 3638020 Lal16g0565 16 3633100 3638020 ECH
Lal16g0565 16 3633100 3638020 Lal23g1037 23 12148204 12154557 LSH