Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0563 ATGTCCTTATCCTGCCCCGACCGCTTCTCTGACTCTATCCTCCTCTGCAGCGAGGACACCTCCGGAATCATCTCCGGTGAGTCGCCTGAATTCTCATCCTCCAATATCGATTTCTTGCCGCCACTGTTCTCATCGTCATCGGAAGAGGACGAGTCCATAGCTGGGTTCATCCAAGACGAGCGCAACTTCGTTCCCGGGCTCGATTATCTTTCAAGGTTTGAGTCTCGGTCGCTCGATGATTCCGCCCGAAAAGAATCAGTTGCATGGATTCTCAAGGTGCAGGCTTATTACGGATTTCAACCGCTCACGGCGTATCTTTCCGTCAATTACGTGGATCGGTTCTTGAACTCTCGGCAGTTGCCGCAAACAAATGGGTGGCCAATGCAACTTCTGTCTGTTGCATGCTTGTCTTTAGCGGCAAAGATGGAGGAACCTCTGGTTCCGTCTCTCTTGGACCTTCAGGTAGCGGGTCCCAAATACATATTTGAGCCCAGAACAATTCGAAGGATGGAACTACTTGTTCTAGGTGTTTTGGATTGGAGGCTAAGATCAATCACCCCATTTAGTTTCCTCAGTTTCTTTGCATTCAAATTAGACTCAAATGGAACTTTTACCGGGTTCCTCATTTCACGGGCTACACAAATAATCTTGTCTAATGTCCAAGAGGCTACCTTTCTTGCATACTGGCCATCATGCATTGCTGCCGCGGCCGTACTATGTGCAGCTAACGAAATTCCTAATTGGTCTCTCGTTAAGCCTGAGCATGCTGAGTCATGGTGCGAGGGGTTAAGAAAAGAGAAAATTGTAGGGTGCTACCAATTAATGCAAGAACTAGTTATTGACAATAACAAGAGGAAGCTCCCTAAAGTGTTGCCACAGCTGCTAGTGACAACTCAGTCCCCAATAAGTTCAAGTGTTTCGTCATCCTCATCTTCTTCAATCTCGTTGTCTTACAAAAGAAGGAGAATAAATAACTGTTTGTGGGTTGATGGTGACACAGAAAACTCCCAGTGA 1014 0.4675 MSLSCPDRFSDSILLCSEDTSGIISGESPEFSSSNIDFLPPLFSSSSEEDESIAGFIQDERNFVPGLDYLSRFESRSLDDSARKESVAWILKVQAYYGFQPLTAYLSVNYVDRFLNSRQLPQTNGWPMQLLSVACLSLAAKMEEPLVPSLLDLQVAGPKYIFEPRTIRRMELLVLGVLDWRLRSITPFSFLSFFAFKLDSNGTFTGFLISRATQIILSNVQEATFLAYWPSCIAAAAVLCAANEIPNWSLVKPEHAESWCEGLRKEKIVGCYQLMQELVIDNNKRKLPKVLPQLLVTTQSPISSSVSSSSSSSISLSYKRRRINNCLWVDGDTENSQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0563 337 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 325 - -
Lal16g0563 337 Gene3D - 57 246 - -
Lal16g0563 337 Pfam Cyclin, C-terminal domain 185 293 IPR004367 -
Lal16g0563 337 ProSitePatterns Cyclins signature. 83 114 IPR006671 -
Lal16g0563 337 SMART cyclin_7 88 176 IPR013763 -
Lal16g0563 337 Pfam Cyclin, N-terminal domain 55 182 IPR006671 -
Lal16g0563 337 PANTHER CYCLINS 1 325 IPR039361 -
Lal16g0563 337 SUPERFAMILY Cyclin-like 48 182 IPR036915 -
Lal16g0563 337 SMART Cyclin_C_2 185 312 IPR004367 -
Lal16g0563 337 CDD CYCLIN 83 175 IPR013763 -
Lal16g0563 337 Gene3D - 66 183 - -
Lal16g0563 337 SUPERFAMILY Cyclin-like 167 289 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0563 Lal-Chr16 3620986 3624604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0563 10 337 Core Cell Cycle Gene Families AT1G70210 61.078 2.27e-137 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0563 K18810 - gmx:100775224 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0563 16 3620986 3624604 Lal15g0505 15 3495550 3500298 LSH
Lal16g0563 16 3620986 3624604 Lal23g1041 23 12175499 12181278 LSH