Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0560 ATGGCGTTAACGAATTCGAGACCGGCAGTGAAGGTTCTATGGGGAGAATTGGAAGAAGACGATGGAGAGGATTTGGATTTCTTATTACCGCCTAAGCAGGTAATCGGTCCTGACCAGAACGGGATAAAGAAGGTGATAGAATACAAGTTCAATGATGAAGGGAACAAGGTTAAGATCACCACCACCACTCGCACGCGTAAACTCGCCAATGCGCGTCTCAGCAAACGCGCTGTTGAGAGGCGTTCGTGGCCTAAGTTTGGTGATGCTATTCATGAGGATGTAGGTAGCAGACTCACTATGGTTTCCACCGAAGAGATCCTTCTCGAACGACCTAAGCCTCTTGTGTTTGTTGGTGCCGTGGGGATATTTGATTGGAGGGGATTTGGTGCAAAATCTCTCAGATCCAAGAACGAGGAACCAAAGGCTGCTGGAGACCCATTAGCACAATTTCAGAAAGGTGCTGTTCTTATGGTCTGTAGGACTTGTGGAAAGAAGGGTGACCACTGGACTTCAAGATGTCCATACAAGGATCTTGCCGCACCATCTGAGGGATTCGTTGACAAGCCTCCAACATCTGATGCCGCAGCTGGTGCTCCTGGGGCTGCAAAGGGAGCATATGTGCCTCCTGGAATGAGAGCCGGGGCAGAGAGGACTGGATCAGATATGAGGCGTAGGAATGATGAAAATTCTGTAAGGGTCACCAACCTCTCGGAGGACACAAGAGAGCCTGATTTGCTTGAACTCTTCCGTCCTTTTGGGGCCGTGAGCAGAGTCTATGTTGCTATTGATCAAAAAACTGGCATGAGCAGAGGATTTGGCTTTGTTAATTTTGTTATCAGGGAAGATGCACAAAGAGCTATTAACAAACTCAATGGATATGGCTATGACAGTCTCATCCTCAGAGTTGAATGGGCCACTCCCAGGACAACCTAG 933 0.4834 MALTNSRPAVKVLWGELEEDDGEDLDFLLPPKQVIGPDQNGIKKVIEYKFNDEGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAIHEDVGSRLTMVSTEEILLERPKPLVFVGAVGIFDWRGFGAKSLRSKNEEPKAAGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAAPSEGFVDKPPTSDAAAGAPGAAKGAYVPPGMRAGAERTGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVIREDAQRAINKLNGYGYDSLILRVEWATPRTT 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0560 310 Pfam Eukaryotic translation initiation factor 3 subunit G 33 178 IPR024675 -
Lal16g0560 310 SMART rrm1_1 230 303 IPR000504 GO:0003723
Lal16g0560 310 SUPERFAMILY RNA-binding domain, RBD 227 308 IPR035979 GO:0003676
Lal16g0560 310 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 9 113 - -
Lal16g0560 310 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 133 310 - -
Lal16g0560 310 CDD RRM_eIF3G_like 230 305 IPR034240 -
Lal16g0560 310 PIRSF Transl_init_eIF-3_RNA-bind 5 114 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lal16g0560 310 PIRSF Transl_init_eIF-3_RNA-bind 129 310 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lal16g0560 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 296 IPR000504 GO:0003723
Lal16g0560 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 307 IPR000504 GO:0003723
Lal16g0560 310 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 11 309 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lal16g0560 310 MobiDBLite consensus disorder prediction 188 230 - -
Lal16g0560 310 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 9 113 - -
Lal16g0560 310 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 133 310 - -
Lal16g0560 310 Gene3D - 202 310 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0560 Lal-Chr16 3603374 3605624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0560 1 310 Eukaryotic Initiation Factors Gene Family AT3G11400 69.350 1.05e-156 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0560 K03248 - gmx:100818725 490.73