Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0554 ATGCCATTTGGTTTAGTCTCGGCCTGGAATAAGCGCCGCAGGAGCAAATCTGAAGATCATACAGACCCATGGATTTACAAACCTGCAGAGTTTTGGCAACTCGAAGATCAAACACCGCAACCTACAAAAAGACTGCATGGGTCATCTGTTTTCATACTCAAGGAGATGGAAGAGGCAACAGGTTCATTCAGTGAGGAAAATCTGCTTGGAAAAGGAGGATTTGGCAAAGTCTACCGGGGCACTTTGCGGTCAGGAGAGGTTGTAGCAATCAAGAAGATGGAGTTGCCAGCAATTAAATTAGCACAGGGGGAACACGAGTTCCGTGTTGAAGTCGACATCTTGAGCAGACTCGACCACCCAAATCTTGTTTCTCTGATAGGCTACTGTGCTGATGGAAAGCATAGGTTCCTTGTATACAAATATATGCCTAATGGGAACCTACAAGATCATTTAAATGGAATTGGGGAAAGAAAAATGGATTGGCCTGTAAGACTAAAAGTGGCACTAGGAGCTGCAAGAGGACTTCATTATCTCCATTCATGTTCTGACATTGGAATCCCTATTGTTCATAGAGATTTCAAATCGACCAATATTCTCTTAGATGCCAACTTTGAAGCTAAGATATCTGATTTTGGGCTCGCCAAGTTAATGCCCGAAGGACAAGAAACACACGTGACAGCCAGAGTACTAGGTACCTTTGGCTATTTTGATCCTGAATATACATCGACTGGGAAACTCACTCTACAAAGTGATGTATATGCTTTTGGTGTTGTTCTACTGGAACTTTTGACTGGACGCCGAGCTATAGATCTAAATCAGGGTCCTAACGATCAGAATCTTGTACTACAGGTCAGGAACATACTGAATGACCGCAAGAAGCTCCGAAAAGTGATAGATCCGGATATGGTTCGAAATTCTTACACCATTCAGTCAATAGTCATGTTTGCCAATCTAGCATCAAGATGTGTCCGTGCTGATAGTAGTGAGAGACCTTCAATGGCAGAATGTGTTAAAGAACTCCAACTTATTATCTATACGAATTCAAAAGGCTTGGGAATGGTTATGCATAGTTTGAGAATGATATAG 1086 0.4227 MPFGLVSAWNKRRRSKSEDHTDPWIYKPAEFWQLEDQTPQPTKRLHGSSVFILKEMEEATGSFSEENLLGKGGFGKVYRGTLRSGEVVAIKKMELPAIKLAQGEHEFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYKYMPNGNLQDHLNGIGERKMDWPVRLKVALGAARGLHYLHSCSDIGIPIVHRDFKSTNILLDANFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAIDLNQGPNDQNLVLQVRNILNDRKKLRKVIDPDMVRNSYTIQSIVMFANLASRCVRADSSERPSMAECVKELQLIIYTNSKGLGMVMHSLRMI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0554 361 PIRSF ILK 32 353 - -
Lal16g0554 361 Gene3D Phosphorylase Kinase; domain 1 32 141 - -
Lal16g0554 361 PANTHER OS01G0750732 PROTEIN 1 361 - -
Lal16g0554 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Lal16g0554 361 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Lal16g0554 361 Gene3D Transferase(Phosphotransferase) domain 1 142 352 - -
Lal16g0554 361 SUPERFAMILY Protein kinase-like (PK-like) 39 346 IPR011009 -
Lal16g0554 361 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 361 - -
Lal16g0554 361 Pfam Protein kinase domain 64 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0554 361 ProSiteProfiles Protein kinase domain profile. 63 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0554 361 CDD STKc_IRAK 69 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0554 Lal-Chr16 3576134 3583278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0554 46 340 Receptor kinase-like Gene Family AT3G58690 47.333 1.90e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Lal16g0554 Pkinase 3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0554 - - gmx:100796654 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0554 16 3576134 3583278 Lal16g0554 16 3576134 3583278 ECH