Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0550 ATGCATTGGGTAAAGGTTCACTCTCAAATCCATCAGAGCAATGGTGCTATGACAAGCCCCCCAATCCTCTCTCCATCATATTCATCTTCAATTGCTTCTTCTTCTGGGAATAAAATAAGCCCTGCGATTCTTTTCATGATAGTGATTTTAGCTGTTGTATTTTTCATCTTGGGTGCACTTCACTTGCTTGTTAGATTTCTCACAAAGCACAGATCTTCCTCTTCATCAATTTCTCAATCCAATAGGTACAATCACATGTCTGAATCTGATGCTTACCAAAGACAATTACAGCAACTATTCCATCTTCATGATTCAGGCTTAGATCAGGCTTTCATAGATGCTCTTCCAGTTTTCCTTTACAAAGAGATTATAGGGTTGAAAGAGCCATTTGATTGTGCAGTTTGCCTTTGTGAGTTTTTGGAAAACGACAACCTCAGATTGCTTCCAACTTGCAATCATGCCTTCCACATTCACTGCATAGACACATGGTTGTTGTCTAATTCAACTTGTCCTCTCTGTAGAGGGACTCTTTATGCATCGGGCTACCCCTTTGAGAACCCGGTTTTCGACTTTGAGGGTCCAAATGAGGAAGATGGGGGTTCAGGAAGTGGTGGGGGAGGGGCTGCTTTTGTTAACAAACCTGCAGAGAATCACATAATGAGTGGGAAAAGGGTGTTCTCTGTTAGGCTTGGAAAGTTCAGAAGCTCAAATAATGGAGATATGGTAGAAAGAATTGAGGGAGAGAGTAGTAGCAATGTTGGTAATTTGGATATAAGAAGATGTTATTCAATGGGGTCTTTTCAGTATGTAGTTGCTGATTCAGATTTGAGAGTGGCTTTATGTCCTCATAGAGGTGATGGTGGTAGCAGTAATAGTATGAGACATATCAAAGGAAGAGCAGTCACAATTGGAAATTTCTCCAATGATAAGGATGTTGAGGACAAAAAAATCAACATTGCAAGGAAAGGTGAAAGTTTTTCTGTTTCCAAGATTTGGCAATGGTCTAGGAAGGATAAGTTAACAAGTTCATCAGAAACCAATTTCAATAATTCCACTGTCACTGCAACTTTGCCTTGGATGAATAAAGACAGAGGTACATGA 1101 0.3996 MHWVKVHSQIHQSNGAMTSPPILSPSYSSSIASSSGNKISPAILFMIVILAVVFFILGALHLLVRFLTKHRSSSSSISQSNRYNHMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFLYKEIIGLKEPFDCAVCLCEFLENDNLRLLPTCNHAFHIHCIDTWLLSNSTCPLCRGTLYASGYPFENPVFDFEGPNEEDGGSGSGGGGAAFVNKPAENHIMSGKRVFSVRLGKFRSSNNGDMVERIEGESSSNVGNLDIRRCYSMGSFQYVVADSDLRVALCPHRGDGGSSNSMRHIKGRAVTIGNFSNDKDVEDKKINIARKGESFSVSKIWQWSRKDKLTSSSETNFNNSTVTATLPWMNKDRGT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0550 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 180 IPR013083 -
Lal16g0550 366 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Lal16g0550 366 SUPERFAMILY RING/U-box 111 179 - -
Lal16g0550 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 5 359 - -
Lal16g0550 366 SMART ring_2 132 173 IPR001841 -
Lal16g0550 366 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 359 - -
Lal16g0550 366 CDD RING-H2_PA-TM-RING 131 174 - -
Lal16g0550 366 Pfam Ring finger domain 131 174 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0550 Lal-Chr16 3541169 3542269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0550 28 344 C3H Transcription Factor Family AT2G18650 37.500 1.64e-54 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0550 - - gmx:100794750 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0550 16 3541169 3542269 Lal16g0550 16 3541169 3542269 ECH
Lal16g0550 16 3541169 3542269 Lal24g1427 24 15589158 15595124 ECH