Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0545 ATGATCCGAAACATAAACGGGTCGGATCGTCGGGTTTTAACATTCCCAGCGGTTCATCCCTGCGAGGATATTTCTCTTTCTACCCTTTTATCTTCCCTTATTACTCTCTCTCATACCATTTCCAATTTCAAATGCAAATTCTTCTCAAGCAATAAACGAAACGCTACAAAGGTTATTAATTTAGTTCAGCTTCTCCAACCCTTTCTTCAAGAGATTCGGGAGAACGAATCGGGTCTTCTACCGGGTTCGGGTTCTGTGACCCTTTGTTTCTCGGAGCTCCATTTAACCTTCCAGAAGCTTCGTTTTTTACTGGAGGATCTTACCCGGGAAGGTGCCCGGCTAAGGATGTTAATGGAGTCGAGTCGGGTTGCGAGTCAGTTTCGGGTTTTGTCTAGATCCGTGGCTACAGCCTTGGATGTTTTCTCTTTTGGCTCTGTTGAGGTGGAATTGAAAGAGCAGGTTGATTTGCTTATGAACCACGCAAGGAAGGGCAAGTTTGAAGTTGAACCCAATGATAAACGGGCCATTATGGTTGTTATGGAGGCTTTGACCCGGTTTGAGAACCAGTTTGACCCGAATGAGGGTGATGTGAGATGGGTTCTTGATCATATTGGGGTTAGAACATGGAGTGAGTGTAACAAGGAGGTGAAGTTTTTGGATAGTGAAATTGGGTTTGAGGGGTTTAATGAGGGAAGTAGAAAGGTGGGTTTTTTATGTAGTTTGATGGCGTTAATGAGTTATTGTAGGTGTTTGTATATGGAAGTTGTTGAAGAAGGTAACAAAAAATGTGATAAAGTTGGAGAAAGTAGCATTGAGAATGAGATTGGGATGGTTCTGAGTTTCATCAACTCTGATGATTTTAGATGTCCAATCTCATTGGAGTTGATGAGTGATCCAGTGACCATAGAGACAGGTCATACCTATGATCGTTGTTCAATTCTCAAATGGTTCACAAGTGGGAATTTAATATGTCCTAAGACAGGTAAGAGGCTTGGAAGCATTGAATTGGTACCTAACTTGGTGCTGAGGAGGTTGATTCAGCAATATTGCTATGCCAATAGCATTCCTACTGCTGATCTTGGCCGTAAGACTCGCGATATCAGTAGGAATGTGCAGCCTGGAAGTTTGGCACAAGAGGAAGCTATGAAAATGGTGGCTGGTTCTCTATGTGGCATGTTTGAGAACAGAGTTGTTGAAGAGAAGAACCGTGCTGCATTTGAGATGAGGCTTCTTTCCAAAACAAGCATTTTTAATAGGTCTTGTTTGGTGGAAGCTGGTTCAGTCCCTCTTTTGTTGAAGTTGTTGTCAACAAGGGATTCATCAGCACAAGAGAATGCCATTGCAGCCCTTTTGAATCTCTCAAAATACTCCAAGAGCAGAGCTATGATAGTTGAGAATTGGGGTTTACAATTGATTGTCGGGGTCTTAAAGAAGGGGCTAAAGATAGAAGCTCGCCAGCATGCTGCTGCAGTGTTGTTCTACCTTGCTTCAAATGATGAGTATAGGAAAGTGATAGGGGAGGAGCCATATGCAATTCCATCATTGATCAGATTGATCAAAGATGACTCTGGCTCCGACCGAGCGAAAAAGAATGGATTGGTTGCATTGTTTGGCCTCCTACTGCACCAACCTGAAAATCAGAAGAGGGTGCTTGAAGCTGATGCAGTTTCTTTATTGGTTAACATCATTAAAGGATGTGAAAAGGAAGAGCTTGTCACAGATTCACTTGCAGTTCTAGCAATTGTGGCAGAGAGAAGTGAAGGAGCAGCTGCTATCCTTCACTGTGGAGCCTTGCCTGTAGCTCTTGAAATTTTGAGTTGTTCAACTTCAAGAGTGGGGAAGGAGCACTGTGTGTCCTTATTGCTTTCTCTATCAAAAAATGGTGGATCAGATGTGGTTGATTATTTAGTAAAGAGCTCTTCTCTTATGGGATCTTTGTATTCCCAACTCAGTGAAGGCACATCTCGAGCGAGCAAGAAGTCCAGTGCTCTAATCAGGATCCTCCATGATTTTTATGAAAGAAGGTCATCTGGTTCCAAGGTTTCAGTTATTCCACGAGAACAATTCATTGACGTATGGTAA 2082 0.427 MIRNINGSDRRVLTFPAVHPCEDISLSTLLSSLITLSHTISNFKCKFFSSNKRNATKVINLVQLLQPFLQEIRENESGLLPGSGSVTLCFSELHLTFQKLRFLLEDLTREGARLRMLMESSRVASQFRVLSRSVATALDVFSFGSVEVELKEQVDLLMNHARKGKFEVEPNDKRAIMVVMEALTRFENQFDPNEGDVRWVLDHIGVRTWSECNKEVKFLDSEIGFEGFNEGSRKVGFLCSLMALMSYCRCLYMEVVEEGNKKCDKVGESSIENEIGMVLSFINSDDFRCPISLELMSDPVTIETGHTYDRCSILKWFTSGNLICPKTGKRLGSIELVPNLVLRRLIQQYCYANSIPTADLGRKTRDISRNVQPGSLAQEEAMKMVAGSLCGMFENRVVEEKNRAAFEMRLLSKTSIFNRSCLVEAGSVPLLLKLLSTRDSSAQENAIAALLNLSKYSKSRAMIVENWGLQLIVGVLKKGLKIEARQHAAAVLFYLASNDEYRKVIGEEPYAIPSLIRLIKDDSGSDRAKKNGLVALFGLLLHQPENQKRVLEADAVSLLVNIIKGCEKEELVTDSLAVLAIVAERSEGAAAILHCGALPVALEILSCSTSRVGKEHCVSLLLSLSKNGGSDVVDYLVKSSSLMGSLYSQLSEGTSRASKKSSALIRILHDFYERRSSGSKVSVIPREQFIDVW 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0545 693 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Lal16g0545 693 Gene3D - 380 670 IPR011989 -
Lal16g0545 693 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 4 682 - -
Lal16g0545 693 PANTHER U BOX DOMAIN-CONTAINING 4 682 - -
Lal16g0545 693 Pfam Armadillo/beta-catenin-like repeat 418 454 IPR000225 GO:0005515
Lal16g0545 693 SUPERFAMILY ARM repeat 388 668 IPR016024 -
Lal16g0545 693 CDD RING-Ubox_PUB 287 329 IPR045210 -
Lal16g0545 693 Pfam U-box domain 285 354 IPR003613 GO:0004842|GO:0016567
Lal16g0545 693 SMART arm_5 498 541 IPR000225 GO:0005515
Lal16g0545 693 SMART arm_5 585 626 IPR000225 GO:0005515
Lal16g0545 693 SMART arm_5 456 497 IPR000225 GO:0005515
Lal16g0545 693 SMART arm_5 414 455 IPR000225 GO:0005515
Lal16g0545 693 SMART arm_5 543 584 IPR000225 GO:0005515
Lal16g0545 693 SUPERFAMILY RING/U-box 285 356 - -
Lal16g0545 693 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Lal16g0545 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
Lal16g0545 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 356 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0545 Lal-Chr16 3500020 3502101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0545 1 693 U-box Gene Family AT1G60190 45.571 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0545 - - gmx:100795816 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0545 16 3500020 3502101 Lal16g0545 16 3500020 3502101 ECH