Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0539 ATGGCTAACAACAATTCCTCAAATGAGTCACCTTCATCTAATTCCAGCAACGCTTCGACTCCTCCGTCGCCACCTTCTCCGCCTTCCGATGATTCAGAGCCTCCCCAAAGTTCGTCGCCATCAAACTCTCATCCTCCGCCGTCACAACCGCCTCCTTCTCCGTCGAAGTCTTCGCTACCACCGTCTCCGTCTCAATCTCCACCGCCACTTAAACCTCTTCCACCTTCCTCGCCTCAGCCACCGAAATTATCGCCGCCTCCACCGTCACATTCTCCACCTCCTACGCCGAAAGCATCACCACCACCTCCTAATAACTCACCATCTCCTACGAATTCACCGTCACCAACAACTTCACCTCCTCCCCCCTCTTCACCACCACCAACACCACCATCAACAACACCACCACCACCCTCCACACCTTCAACACCACCATCACCGTCAAATGGTGGTTCTTCACCTCCTAGCCCTTCTCAGCAGTCAGGTCCACCTTCATCGCAAACTCAAATCCCTCCTCCTCCACCTAAGAACACACCTTCTCCACCAACTCTACCATCACCTGGTTCAAATGTTACTCCGGCTAGGCCGCCACCACATGGTTCGGTGCTGAACCCTCCACCTGTTTCCCCATCTGGACACCATCCAAAACCAAGTGGTACTCCTTCAAATAGCCCTTCCCGGCCAACTTCGAATGGTTCCGGTAAGAATAACACCGGAGAAATTGTTGGCCTTACCCTCGGGGTGGTTGCAGTTCTTGTCATTCTTGGTCTACTTCTGTATTTAATATTCAGGCGCAACAAAACGCGACCGAATCATTATGCTATTCCACCCCCTAATAAATTTCATCATAGGAAAGGAGGTGCAGATGTGTGTTACTGTGTAGAGGAGCAAGCTGTTAGGTACGGTCCAAAGGAACTTACATCTCCTGGAACCAACCTTTCAGACCCAGCATCAGTGCCCATGGGTCAGATGCTTTTTAGTTATGACACGATTTCGGAAATAACTGATGGATTTTCTAGTCAGAACGTGATAGGGGAAGGAGGATTCGGGTGTGTTTACAAGGCTTTCATGCCAGACGGTAGAATTGGAGCAGTTAAGCAGCTGAATACTGGTGGTGGGCAGGGAGAACGGGAGTTCAGGGCAGAGGTGGATATTATCAGCCGTATTCATCATCGACATTTGGTATCATTAATTGGTTATTGCATAAGCGAGCAGCAAAGAGTGCTTATCTATGAGTTTGTTCCTAATGGGAATCTCAGTCACCATATGCATGGAAGTGGTGTGCCAGTTTTGAGTTGGAAAAAGAGGACAAAGATAGCATTTGGCTCAGCCAGGGGCTTGGCATATCTGCATGAGGGCTGCAACCCCAAGATTATCCACAGAGACATCAAGTCAGCAAACATACTATTAGATGATGATTTTGAGGCACAAGTTGCAGACTTTGGACTTGCCAGACTAACCGATGATGCTAATACCCATGTATCAACTAGGGTGATGGGAACCTTCGGGTACATGGCCCCTGAATATGCAACCAGTGGAAAATTAACAGATAGATCAGATGTTTTCTCATTTGGAGTTGTCCTCCTTGAGCTTATAACTGGAAGGAAACCTGTCGATCCAATGCAACCTGTGGGAGAAGAGAGTTTGGTTGAGTGGGCCCGTCCTCTTCTCCTTCATGCAATTGAGACAGGTGACTGTAGTGAACTAGTGGACCCGAGGCTTGAAGGGCAATATGTTGACAGTGAAATGTTCAGAATGATTGAGGCAGCAGCAGCATGTGTTCGCCATTCTGCTCCAAAACGGCCTCGTATGGTTCAGTTGGCAAGAGCCTTAGAAACTGGAGATCAATGTGATTTATCTAATGGGGTGAAATATGGCCAGAGCACTGCTTATGACTCTGGGCAATACAACAAAGACGTAATGAGATTCAGAAGGATGGCCAATGGCAGTTTTGGTGAATCTGATTCGGATATGTATAGTAAAGATTATAGCTCAAAAGAGATGCCTGGACCCCAATATCAGTGGAGGCGAAGTATTTCAAGTGCTGATTCAGAAGCTAAAGCTTACTATAGCCTTAATAACAGTGCTGCTGAGAACAGGTCTTGA 2103 0.4779 MANNNSSNESPSSNSSNASTPPSPPSPPSDDSEPPQSSSPSNSHPPPSQPPPSPSKSSLPPSPSQSPPPLKPLPPSSPQPPKLSPPPPSHSPPPTPKASPPPPNNSPSPTNSPSPTTSPPPPSSPPPTPPSTTPPPPSTPSTPPSPSNGGSSPPSPSQQSGPPSSQTQIPPPPPKNTPSPPTLPSPGSNVTPARPPPHGSVLNPPPVSPSGHHPKPSGTPSNSPSRPTSNGSGKNNTGEIVGLTLGVVAVLVILGLLLYLIFRRNKTRPNHYAIPPPNKFHHRKGGADVCYCVEEQAVRYGPKELTSPGTNLSDPASVPMGQMLFSYDTISEITDGFSSQNVIGEGGFGCVYKAFMPDGRIGAVKQLNTGGGQGEREFRAEVDIISRIHHRHLVSLIGYCISEQQRVLIYEFVPNGNLSHHMHGSGVPVLSWKKRTKIAFGSARGLAYLHEGCNPKIIHRDIKSANILLDDDFEAQVADFGLARLTDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDPMQPVGEESLVEWARPLLLHAIETGDCSELVDPRLEGQYVDSEMFRMIEAAAACVRHSAPKRPRMVQLARALETGDQCDLSNGVKYGQSTAYDSGQYNKDVMRFRRMANGSFGESDSDMYSKDYSSKEMPGPQYQWRRSISSADSEAKAYYSLNNSAAENRS 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0539 700 ProSiteProfiles Protein kinase domain profile. 337 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0539 700 MobiDBLite consensus disorder prediction 1 235 - -
Lal16g0539 700 Gene3D Transferase(Phosphotransferase) domain 1 413 625 - -
Lal16g0539 700 SUPERFAMILY Protein kinase-like (PK-like) 311 610 IPR011009 -
Lal16g0539 700 Gene3D Phosphorylase Kinase; domain 1 308 412 - -
Lal16g0539 700 CDD STKc_IRAK 343 611 - -
Lal16g0539 700 MobiDBLite consensus disorder prediction 1 17 - -
Lal16g0539 700 Pfam Protein tyrosine and serine/threonine kinase 340 542 IPR001245 GO:0004672|GO:0006468
Lal16g0539 700 MobiDBLite consensus disorder prediction 652 676 - -
Lal16g0539 700 MobiDBLite consensus disorder prediction 214 235 - -
Lal16g0539 700 PANTHER RECEPTOR-LIKE KINASE 84 675 - -
Lal16g0539 700 SMART serkin_6 337 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0539 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Lal16g0539 700 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 84 675 - -
Lal16g0539 700 MobiDBLite consensus disorder prediction 18 213 - -
Lal16g0539 700 PRINTS Proline rich extensin signature 17 38 - -
Lal16g0539 700 PRINTS Proline rich extensin signature 39 55 - -
Lal16g0539 700 PRINTS Proline rich extensin signature 57 74 - -
Lal16g0539 700 PRINTS Proline rich extensin signature 76 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0539 Lal-Chr16 3456985 3463450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0539 196 666 Trihelix Transcription Factor Family AT1G70460 55.929 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lal16g0539 PK_Tyr_Ser-Thr 6e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0539 16 3456985 3463450 Lal23g1052 23 12268550 12273272 LSH