Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0533 ATGTCAACACTGAACCATCTTTTTGATCTTCCAGAACAAATATGTTATGTACAATGTGGATTCTGCACCACAATTTTGATGGTAAGTGTCCCATGCAGCAGTATGTCAATGGTGGTTACAGTGAGATGTGGGCACTGCACAAGCCTCCTCTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTACACCTTTTAGCATCTCTTAGCCATCTTGAGCCAAAAGAAGCTAGTCCAGAAGAGGATATAAACAAGACTTTGAACAGCTATAATGCTTCCATGATGACTTATTCTGATTGTGAGGAAGAGGATGTGATTCCAATTAACAATGTTGTGAATAAACCTCCAGAGAAGAGACAAAGAACACCATCAGCATATAACCGATTCATCAAGGATGAGATCAAAAGGCTAAAGGCTGAAAACCCTGACATGACCCATAAGGAAGCTTTCAGTACAGCTGCAAAGAATGTAAGATTGGTTAAGAATAAAGGGTACTTAAGTAAGAATGATCCTGAAAATATTTGCCATTTTCAGTGGGCCAATTTCCCTCCAACTCAGTGCAAAGGGGATGAAGAAAACTGTAGCCAAACAGAGCCAACACTGGATCTAGACTCCCATGTGGACCCTAATGATGCTGAGGTCAATGAAGAAGGTCATGGTTTCCGTGGAAGAAAGGTTCCAAGGAATTCCATCTTGGGAAGGATGCCATTTGAATGA 714 0.409 MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSSMSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASLSHLEPKEASPEEDINKTLNSYNASMMTYSDCEEEDVIPINNVVNKPPEKRQRTPSAYNRFIKDEIKRLKAENPDMTHKEAFSTAAKNVRLVKNKGYLSKNDPENICHFQWANFPPTQCKGDEENCSQTEPTLDLDSHVDPNDAEVNEEGHGFRGRKVPRNSILGRMPFE 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0533 237 SUPERFAMILY HMG-box 109 154 IPR036910 -
Lal16g0533 237 Gene3D High mobility group box domain 109 184 IPR036910 -
Lal16g0533 237 CDD HMG-box 120 147 - -
Lal16g0533 237 Pfam YABBY protein 11 155 IPR006780 GO:0007275
Lal16g0533 237 PANTHER PROTEIN YABBY 6-RELATED 1 157 IPR006780 GO:0007275
Lal16g0533 237 PANTHER AXIAL REGULATOR YABBY 4 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0533 Lal-Chr16 3410584 3413336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0533 2 237 C2C2-YABBY Transcription Factor Family AT1G23420 52.362 9.08e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lal16g0533 YABBY 3.3e-58 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0533 K25796 - gmx:100779415 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0533 16 3410584 3413336 Lal16g0533 16 3410584 3413336 ECH
Lal16g0533 16 3410584 3413336 Lal15g0480 15 3290109 3292346 LSH