Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0516 ATGTTCGGGTCCTCACAGCCCGCTCCCAAATCCACCATCAAATTCCTTTGCAGCTATGGTGGCAAGATCCACCCCCGCTACCCCGAAGGCAAGCTCCGATATGTCGGTGGCCACACTCGCATCCTTGCCGTTGATCGCACCATTTCATTTTCCAAGTTGCTACTGAAGTTGCAAGAACTGTGTGGAACCTCCGTGAGGCACCTTCGCTGCCAGTTACCAACCGAAGATCTCGACGCTTTGGTATCCATAACCTCCGATGAGGATCTTGCAAACCTAATCGAGGAATACGATCACGCGGCGTCAATGTCAGCGTCGTTGAAGATCAAAGTCTTCCTATCACCGCCAAGATCTATTAACAAGGCTTCCGTACCTCCGTCGCCGTCACTGTCAAAATCAACGTCCTCCACATCCTCATCCTCATCCTCCTCTTCGTCATCATATCACAGCGCTACTGTTGGTGGTTCTGTTTTTAATTCTTGCCGGAGTTTGAAGTCTACAGTACCGGTGATCAATCGTTGTGTCCATCAGATATCACCGGCGACTCACTCAGTTATGATGGAGAAAAAAACTGGCAGTGTTAGTTGGATGAATGTTCCTCTTCCCCGCTATGGTAACCATAATCATGGTCAAGGGAAGACTTGCCACGCCGGCCAGGTTCAACTAATTCACAACGTCTGCAATCACGGGCAATAA 693 0.4964 MFGSSQPAPKSTIKFLCSYGGKIHPRYPEGKLRYVGGHTRILAVDRTISFSKLLLKLQELCGTSVRHLRCQLPTEDLDALVSITSDEDLANLIEEYDHAASMSASLKIKVFLSPPRSINKASVPPSPSLSKSTSSTSSSSSSSSSSYHSATVGGSVFNSCRSLKSTVPVINRCVHQISPATHSVMMEKKTGSVSWMNVPLPRYGNHNHGQGKTCHAGQVQLIHNVCNHGQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0516 230 SUPERFAMILY CAD & PB1 domains 30 121 - -
Lal16g0516 230 MobiDBLite consensus disorder prediction 120 147 - -
Lal16g0516 230 Pfam PB1 domain 30 110 IPR000270 GO:0005515
Lal16g0516 230 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 5 224 - -
Lal16g0516 230 SMART PB1_new 27 113 IPR000270 GO:0005515
Lal16g0516 230 CDD PB1_UP2 16 112 - -
Lal16g0516 230 Gene3D - 31 113 - -
Lal16g0516 230 MobiDBLite consensus disorder prediction 122 147 - -
Lal16g0516 230 PANTHER OS05G0427100 PROTEIN-RELATED 5 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0516 Lal-Chr16 3284408 3287190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0516 13 112 MAP Kinase Kinase Kinase AT5G57610 49.505 5.08e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0516 - - lang:109349167 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0516 16 3284408 3287190 Lal15g0460 15 3125000 3129465 LSH