Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0515 ATGGAGGAAGCACTACGAGTTCTCAACGGCATGCCTCCGATTGCAGAACCCAAATTACAAGACACCATTATCACCACCGACCACCACCGCGGCAAGAAACCCTCCGCCTCCAACAAGAGAGCCTTGCGAGAGAACGGTTCTTCTGCCGCCGCATCCACTGGTGGAGCCATGAGGTACCGCGGAGTTAGGCGCAGGCCGTGGGGCCGTTACGCGGCGGAAATACGAGACCCTCAGACGAAAGAGCGGCGCTGGCTTGGCACTTTTGACACGGCGGAGGAAGCTGCTTGTGCCTACGACTGCGCCGCCCGTGCCATGCGCGGCCTTAAAGCTCGTACTAATTTCGTTTACCCAACTTCACCACCTTCTCCCGCCACCGAATTTTGTCACTTCAATTTCCCAAAATACACTCACTCTCAACAGCAACAACACTTGAACAAAATTTCACCTTATCCAGCATCAGCTACCCTTCACCACCAAGACACTTCTTCTTCCCTTAACATGCTTCTCTTTCGTGACATCCTCAATTCTTCTTCTGCTCATCACTTTCACAATTACAACTGCAATGACACTTCTTCTTCAACCCCATTTGTGAACTGTTATGCTAATGGTTCGAGTGTTAATGCTAATAATATCACTTGTGGTGCAGTTCAAAACAGTTATGGTTACAAAACCAAAATTGAAGCTGATGATGAAAATGAGGACTTGGAATTTTATGACTCTGGGTTATTGGAAGAAATAGTTCACAAGTTCTTGCCAAAATCAAGGGCGAAGAAATGTGAAACTCCACAGAAAATTCTGGAGACTAATTTCTGCAACCCTGTTTGTTCTGATAATGTGTTCCTTTCCAGTGCACCGTGCTATAAAGAGATGAAGAGTGAGCTTCCCAGGAACAATGGTCTTGGTGGTGTAGCCTCTTTTGATTATCACCAAGGTTATCCCATGAAGCAATTTGGCACTTTCGACAATGAGTTTAACGTTAATGCTGTGCAAGCTGTGCCTCCTATTGGGAATGAACAAGTCATGATGAATCATGCAGGGTACACTTCCATTATGGAAGATACCTTACAGTACCCTGATTTTCTTAATGTTTTTGCATTCAGGATGCAAAATGCTTAG 1116 0.4588 MEEALRVLNGMPPIAEPKLQDTIITTDHHRGKKPSASNKRALRENGSSAAASTGGAMRYRGVRRRPWGRYAAEIRDPQTKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPPSPATEFCHFNFPKYTHSQQQQHLNKISPYPASATLHHQDTSSSLNMLLFRDILNSSSAHHFHNYNCNDTSSSTPFVNCYANGSSVNANNITCGAVQNSYGYKTKIEADDENEDLEFYDSGLLEEIVHKFLPKSRAKKCETPQKILETNFCNPVCSDNVFLSSAPCYKEMKSELPRNNGLGGVASFDYHQGYPMKQFGTFDNEFNVNAVQAVPPIGNEQVMMNHAGYTSIMEDTLQYPDFLNVFAFRMQNA 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0515 371 MobiDBLite consensus disorder prediction 27 56 - -
Lal16g0515 371 Gene3D AP2/ERF domain 57 116 IPR036955 GO:0003700|GO:0006355
Lal16g0515 371 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Lal16g0515 371 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 220 - -
Lal16g0515 371 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 235 371 - -
Lal16g0515 371 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Lal16g0515 371 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Lal16g0515 371 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Lal16g0515 371 SUPERFAMILY DNA-binding domain 58 115 IPR016177 GO:0003677
Lal16g0515 371 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 220 - -
Lal16g0515 371 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 235 371 - -
Lal16g0515 371 CDD AP2 58 114 IPR001471 GO:0003700|GO:0006355
Lal16g0515 371 Pfam AP2 domain 58 107 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0515 Lal-Chr16 3278066 3279181 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0515 1 264 AP2-EREBP Transcription Factor Family AT1G24590 40.206 7.46e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal16g0515 AP2 2.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0515 - - lang:109332560 568.54