Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0514 ATGGAGGAAGCACTACGAGTTCTCAACGGCATGCCTCCGATTGCAGAACCCAAATTACAAGACACCATTATCACCACCGACCACCACCGCGGCAAGAAACCCTCCGCCTCCAACAAGAGAGCCTTGCGAGAGAACGGTTCTTCTGCCGCCGCATCCACTGGTGGAGCCATGAGGTACCGCGGAGTTAGGCGCAGGCCGTGGGGCCGTTACGCGGCGGAAATACGAGACCCTCAGACGAAAGAGCGGCGCTGGCTTGGCACTTTTGACACGGCGGAGGAAGCTGCTTGTGCCTACGATGCGCCGCCCGTGCCATGCGCGGCCTTAAAGCTCGCATCAGCTACCCTTCACCACCAAGACACTTCTTCTTCCCTTAACATGCTTCTCTTTCGTGACATCCTCAATTCTTCTTCTGCTCATCACTTTCACAATTACAACTGCAATGACACTTCTTCTTCAACCCCATTTGTGAACTGTTATGCTAATGGTTCGAGTGTTAATGCTAATAATATCACTTGTGGTGCAGTTCAAAACAGTTATGGTTACAAAACCAAAATTGAAGCTGATGATGAAAATGAGGACTTGGAATTTTATGACTCTGGGTTATTGGAAGAAATAGTTCACAAGTTCTTGCCAAAATCAAGGGCGAAGAAATGTGAAACTCCACAGAAAATTCTGGAGACTAATTTCTGCAACCCTGTTTGTTCTGATAATGTGTTCCTTTCCAGTGCACCGTGCTATAAAGAGATGAAGAGTGAGCTTCCCAGGAACAATGGTCTTGGTGGTGTAGCCTCTTTTGATTATCACCAAGGTTATCCCATGAAGCAATTTGGCACTTTCGACAATGAGTTTAACGTTAATGCTGTGCAAGCTGTGCCTCCTATTGGGAATGAACAAGTCATGATGAATCATGCAGGGTACACTTCCATTATGGAAGATACCTTACAGTACCCTGATTTTCTTAATGTTTTTGCATTCAGGATGCAAAATGCTTAG 993 0.4653 MEEALRVLNGMPPIAEPKLQDTIITTDHHRGKKPSASNKRALRENGSSAAASTGGAMRYRGVRRRPWGRYAAEIRDPQTKERRWLGTFDTAEEAACAYDAPPVPCAALKLASATLHHQDTSSSLNMLLFRDILNSSSAHHFHNYNCNDTSSSTPFVNCYANGSSVNANNITCGAVQNSYGYKTKIEADDENEDLEFYDSGLLEEIVHKFLPKSRAKKCETPQKILETNFCNPVCSDNVFLSSAPCYKEMKSELPRNNGLGGVASFDYHQGYPMKQFGTFDNEFNVNAVQAVPPIGNEQVMMNHAGYTSIMEDTLQYPDFLNVFAFRMQNA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0514 330 CDD AP2 58 120 IPR001471 GO:0003700|GO:0006355
Lal16g0514 330 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Lal16g0514 330 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Lal16g0514 330 SUPERFAMILY DNA-binding domain 58 101 IPR016177 GO:0003677
Lal16g0514 330 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Lal16g0514 330 MobiDBLite consensus disorder prediction 27 56 - -
Lal16g0514 330 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 118 179 - -
Lal16g0514 330 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 100 - -
Lal16g0514 330 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 194 330 - -
Lal16g0514 330 Pfam AP2 domain 58 100 IPR001471 GO:0003700|GO:0006355
Lal16g0514 330 SMART rav1_2 58 122 IPR001471 GO:0003700|GO:0006355
Lal16g0514 330 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 194 330 - -
Lal16g0514 330 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 100 - -
Lal16g0514 330 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 118 179 - -
Lal16g0514 330 ProSiteProfiles AP2/ERF domain profile. 58 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0514 Lal-Chr16 3266814 3267930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0514 1 223 AP2-EREBP Transcription Factor Family AT1G24590 38.610 2.85e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal16g0514 AP2 5.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0514 - - lang:109332560 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0514 16 3266814 3267930 Lal15g0459 15 3119327 3120448 LSH
Lal16g0514 16 3266814 3267930 Lal23g1071 23 12415121 12416203 LSH