Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0508 ATGGAATTCGAAGAGCAAGAGGAGCAAGAAGAGTTGTGTTTCGACCCACTGGGAAACCCGACACCGGTTAAAATGTCCGGTTCAGTTGAACCCATCATGGTTCCTCAACCGCTTAGGAGTAGCAACAAGGGTAGGTACAGGGAGTGTCTGAAAAACCACGCCGTCAGCATCGGTGGCAACGCTCTTGACGGATGCGGAGAGTTCATGCCTGCCGGAACAGAAGGAACCCTCGACGCCCTCAAATGCGCCGCCTGCAACTGCCATCGCAACTTCCACCGCAAGGAAACCGACACCACCGTCATCGTCACAGGTGCAGATCCTTTCCTCCTAACTCATCACCCTCAACACCACCAGCCACCACCAGCACATTTCGCGGCGTACTACCGTTCCCCGGCGGGGTACCTTCAAGTGGGAGGAGGCCTTCACCATAGAGGAGCTACGCCAGGTGGGATGTTGGCTCTGCCGTCAACTTCCGGTGCTGACGGTGGAGGATGTGGGACTCAAAGCACGAGGGAGGATGAAGAAGACATGTCGAACCCGATGAGTGGTGGAGATGGGAGTGCAGGATCGAAGAAGAGGCATAGGACAAAGTTCAGTCAAGAGCAGAAAGACAAGATGCTTGAACTTGCAGAGAGGTTAGATTGGAGGATTCAGAAGCATGATGAGAGTTTGATTCAAGAATTCTGTAACGAAACTGGGGTTAAGCGTCACGTTCTTAAGGTTTGGATGCATAACAACAAACACACTCTTGGTAAGAAGCCCTAG 765 0.5268 MEFEEQEEQEELCFDPLGNPTPVKMSGSVEPIMVPQPLRSSNKGRYRECLKNHAVSIGGNALDGCGEFMPAGTEGTLDALKCAACNCHRNFHRKETDTTVIVTGADPFLLTHHPQHHQPPPAHFAAYYRSPAGYLQVGGGLHHRGATPGGMLALPSTSGADGGGCGTQSTREDEEDMSNPMSGGDGSAGSKKRHRTKFSQEQKDKMLELAERLDWRIQKHDESLIQEFCNETGVKRHVLKVWMHNNKHTLGKKP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0508 254 Gene3D - 176 252 - -
Lal16g0508 254 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 39 253 - -
Lal16g0508 254 MobiDBLite consensus disorder prediction 155 200 - -
Lal16g0508 254 MobiDBLite consensus disorder prediction 1 20 - -
Lal16g0508 254 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 253 - -
Lal16g0508 254 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
Lal16g0508 254 Pfam ZF-HD protein dimerisation region 45 96 IPR006456 -
Lal16g0508 254 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
Lal16g0508 254 SUPERFAMILY Homeodomain-like 177 252 IPR009057 -
Lal16g0508 254 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 191 247 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0508 Lal-Chr16 3211431 3212195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0508 43 250 ZF-HD Transcription Factor Family AT4G24660 52.404 3.47e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal16g0508 ZF-HD_dimer 1.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0508 - - gmx:100808910 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0508 16 3211431 3212195 Lal15g0453 15 3066278 3067054 LSH
Lal16g0508 16 3211431 3212195 Lal23g1077 23 12445632 12446384 LSH