Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0506 ATGGACCCTGATACGTCAAACCTTCTTTGTTCTGAGGACAACAGTACATGTTTTGATGATGTTGCTGGGTTTGGAATCTCAACTTCATGGGCCCACACAAACCTTAACTCTGTCAATGAATGTCCCAGTTTTGTGTTTCAGAGTGAGGAAACTGTGAGGGTTATGATTGAGAGGGAGAGGGAGCATTTGCCCAGAGATGATTACTTCAAGAGACTGAAGAGTAGGGAATTGGATATAAGTGTTAGGAGAGAGGCTATTGATTGGATTTGCAAGAGTCATGCTTACTATGGCTTTGGATATTTGACCTTTTGCCTGGCTGTGAACTACTTGGATCGCTTCCTATCCGTATATGAATTACCGAGAGATAAAAGTTGGACCGGGCAATTGCTAGCGGTTGCATGCTTATCAATTGCAGTTAAAATGGATGAGATTAAAGTGCCTCAATCTGTAGATTTGCAGGTTGGAGAACCAAAGTTTTTCTTCGAGGGTAAAACCATTCAAAGAATGGAACTATTGGTTTTAGGTACATTGAGATGGAAGATGCAAGCTTTAACTCCATGCTCTTTCGTAGACTACTTCCTCGGCAAGATCACTTGTGAACATCAACCAGCAGAGCTATACATTTCAAGATCAATACAACTTATACTTAGCATAATCGAGGGTATTGACTTCTTGGAATTCAAGCCTTCTGAAATTGCAGCAGCTGTGGCAATTTATGTTTCAAAGGAAATTCATGCAAAAGATATTGATAAGGCCATAGTTGGTTTTTCCATTGTTGAGGAGGAGAGAGTTCTAAAGTGTGTTGAAATGGTCAGAGATATGAATGTTTATGCTAATTTGGGCAATTACTCTTCTGCACTATTTGTACCGCAAAGCCCTATTGGGGTATTGGAAACTGGATGCTCAAGTTTTAAGAGTGATGAATTAACAACTGGGTCATGTCCAAATACTTCACATGATAGTTCAAATACTAAGATGAACAACAAATTAGATGGCCCTTCAACTAATGGCACTTTTACAACTCATGAAATGTGA 1035 0.3952 MDPDTSNLLCSEDNSTCFDDVAGFGISTSWAHTNLNSVNECPSFVFQSEETVRVMIEREREHLPRDDYFKRLKSRELDISVRREAIDWICKSHAYYGFGYLTFCLAVNYLDRFLSVYELPRDKSWTGQLLAVACLSIAVKMDEIKVPQSVDLQVGEPKFFFEGKTIQRMELLVLGTLRWKMQALTPCSFVDYFLGKITCEHQPAELYISRSIQLILSIIEGIDFLEFKPSEIAAAVAIYVSKEIHAKDIDKAIVGFSIVEEERVLKCVEMVRDMNVYANLGNYSSALFVPQSPIGVLETGCSSFKSDELTTGSCPNTSHDSSNTKMNNKLDGPSTNGTFTTHEM 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0506 344 SMART cyclin_7 87 175 IPR013763 -
Lal16g0506 344 Pfam Cyclin, C-terminal domain 185 275 IPR004367 -
Lal16g0506 344 Gene3D - 55 270 - -
Lal16g0506 344 SUPERFAMILY Cyclin-like 167 274 IPR036915 -
Lal16g0506 344 MobiDBLite consensus disorder prediction 312 344 - -
Lal16g0506 344 Pfam Cyclin, N-terminal domain 52 181 IPR006671 -
Lal16g0506 344 ProSitePatterns Cyclins signature. 82 113 IPR006671 -
Lal16g0506 344 SUPERFAMILY Cyclin-like 43 181 IPR036915 -
Lal16g0506 344 PANTHER CYCLINS 36 330 IPR039361 -
Lal16g0506 344 CDD CYCLIN 82 174 IPR013763 -
Lal16g0506 344 PANTHER CYCLIN-D4-1-LIKE 36 330 - -
Lal16g0506 344 SMART Cyclin_C_2 184 292 IPR004367 -
Lal16g0506 344 Gene3D - 65 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0506 Lal-Chr16 3197452 3200039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0506 47 252 Core Cell Cycle Gene Families AT5G65420 55.769 3.73e-83 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0506 K18810 - gmx:100794010 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0506 16 3197452 3200039 Lal15g0450 15 3048413 3051020 LSH
Lal16g0506 16 3197452 3200039 Lal15g1597 15 17832566 17834735 PCT
Lal16g0506 16 3197452 3200039 Lal16g1685 16 15823677 15827138 PCT
Lal15g1597 15 17832566 17834735 Lal16g0506 16 3197452 3200039 PCT
Lal16g1685 16 15823677 15827138 Lal16g0506 16 3197452 3200039 PCT