Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0502 ATGGTTTTACTTCGACAGGGCATGCAGCAATTTCGAAAATATTATAACTCTGAAGTTCAAATGATGAATAGTAGCTTTCCTCGGGCATGCATCTCAGATACATACAATTACATTATCTCAAAACCGAGATCCAAGGCAGAAAATAAAGAAACAGCTGCCAAGAAACACAGTGATGCAGAAAAAAGACGTAGAATTCGAATCAACGAACAATATAATGCCCTTCGTAGGATCCTCCCCAGCATATTCAACCAGCACCTGAATTCTAGCAGCATTGGAAATGAACCCAACCGCGTGAAAACGGACAAAGCATCGATACTGGTAGAGACAATCAAGCAATTGAGGAAGCTGGAGAAAAGTGTGCCAAAAATGCTAATTCCTAGTTGGGAAGATGAATTTACTACAGAACAATGTAATAATCAAGAGCAGCAGGGTCTAGTGAAAGTCACATTGAGTTGTGAGGATAGACGAGGATTGATGCTAGCAATAGAGAGGGCGGTGGGGTCAGTGAATGCCAAGTTGGTAAATGCTGACCTGGTTACAGTGGGTGGAAGAGCCAAATTTGTGTTGTGGGTACAAGGTTTGGTGGCTGGAAAAGAAGGTTTGAGGATGCTAAGGAGAACTCTTAAGGTTGTAATGCACAAACCAGTCTTTAAGATTCAGCGTTTAACTCAATAG 675 0.4163 MVLLRQGMQQFRKYYNSEVQMMNSSFPRACISDTYNYIISKPRSKAENKETAAKKHSDAEKRRRIRINEQYNALRRILPSIFNQHLNSSSIGNEPNRVKTDKASILVETIKQLRKLEKSVPKMLIPSWEDEFTTEQCNNQEQQGLVKVTLSCEDRRGLMLAIERAVGSVNAKLVNADLVTVGGRAKFVLWVQGLVAGKEGLRMLRRTLKVVMHKPVFKIQRLTQ 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0502 224 Pfam Helix-loop-helix DNA-binding domain 55 116 IPR011598 GO:0046983
Lal16g0502 224 PANTHER TRANSCRIPTION FACTOR BHLH131 11 218 - -
Lal16g0502 224 SMART finulus 57 122 IPR011598 GO:0046983
Lal16g0502 224 CDD ACT_UUR-ACR-like 148 193 - -
Lal16g0502 224 PANTHER TRANSCRIPTION FACTOR BHLH30 11 218 IPR045847 GO:0003700|GO:0006355
Lal16g0502 224 Gene3D - 46 123 IPR036638 GO:0046983
Lal16g0502 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 116 IPR011598 GO:0046983
Lal16g0502 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 124 IPR036638 GO:0046983
Lal16g0502 224 SUPERFAMILY ACT-like 144 212 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0502 Lal-Chr16 3175112 3176555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0502 52 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 32.716 1.53e-16 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal16g0502 HLH 9.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0502 - - lang:109349151 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0502 16 3175112 3176555 Lal15g0440 15 3015075 3019945 LSH