Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0500 ATGGGTTTGAATGGTGTTTGTTTATGCAGTAATGCAGCAGAGGGTAAAAGGAGAGAAGAGAAAGAAAACCCAGAAATGGCATTGAATGCAAATCATAAAAAAGATAATTTTTCAAGCGATGATGATTCATCTCCAAGAGGGGTATTGGAAACCCCTGTTTCAGGAACAGAGTCCGATATCAGTGGAAACAGCAGAAGCAGTGGCCATTCCATTTCACCGTTAAGCTCACCGTCGGCTGCGACGGCGGAGGAGCAGAGAGTGGGTGGATTTGATGGGTACATGCCGCAATGGAAGACAATGTTTGACGTTTTGACGTTTAAGTCAGTTAGAAAATTAACGGTGCTTCCTCTGCTTTCGGCGAACCATGATGTTTCGAAGAAAGGGTCGACAAAGAAATTGGCCCGTATTCGAAGTGCGGAAGATACAATTGATATTGGAGCTATTCCTATGAAACCATCTTGGAGGAACTTCGATTATGCAGAGCTTGCAGCTGCAACTGATGATTTCAGTTCCGAAAACATGATTGGGAAAGGTGGTCATGCTGAAGTGTTCAGAGGGTACCTACCAGATGGTCAAGTTATAGCAGTAAAGAGGCTAATGAAGAATGAAAAGGATCCTGGGGATAGAGCGGTTGATTTCTTAACAGAGCTTGGAATCATTGCACACATAAACCACCAGAACGCAACACACCTTGTTGGGTTTGGGATTGAGCGCGGCCTCTACTTTGTTCTACAATTTGCTCCATATGGCAGCCTTTCTTCTATGCTTTTTGGTTCTGAATATTTTGAGTGGAAGAAAAGGTTCAATGTAGCTGTTGGGGTAGCAGAAGGGTTATTGTATCTCCATCAAGATTGCCCAAGAAGAATCATTCATAGAGACATTAAAGCCTCAAACATATTACTCAACGACAATTATGAAGCTGAGATTTCAGATTTTGGACTAGCAAAGTGGCTCCCGGGTAAGTGGTCCCACCACGTTGCCTTCCCAATAGAAGGCACATTCGGGTATTTGGCTCCAGAGTACTTCATGCACGGAGTTGTGGATGAGAAAACTGATGTATTCGCGTTTGGGGTTTTGCTGTTGGAGCTTATAACAGGTCGTCGTGCAGTTGATTCTGATAGTAGACAAAGTCTTGTGGTCTGGGCCAAGCCATTTCTGGAGACAAACAATGTCAAAGAAATAGCAGACCCCAGATTAGGAGAGGAATATGATCCTACTGAAATGAACCTTGTGATGGTGGTAGCTTCCATGTGTGTCCACCATGTATCGTCCATGCGACCATACATGGATCATGTTGTGAAGCTGCTGAAGGGTGAAGCAGCTATAGAACTAAAACAGAGTTCAGGTTCATCAAAATCACTATTGTTAGAGGCATGTGACCTAGAAAATTATACTTGCTCTAATTACTTGAAGGACCTAAACCGCCACAAACAATTACTCATGGAGTGA 1449 0.4341 MGLNGVCLCSNAAEGKRREEKENPEMALNANHKKDNFSSDDDSSPRGVLETPVSGTESDISGNSRSSGHSISPLSSPSAATAEEQRVGGFDGYMPQWKTMFDVLTFKSVRKLTVLPLLSANHDVSKKGSTKKLARIRSAEDTIDIGAIPMKPSWRNFDYAELAAATDDFSSENMIGKGGHAEVFRGYLPDGQVIAVKRLMKNEKDPGDRAVDFLTELGIIAHINHQNATHLVGFGIERGLYFVLQFAPYGSLSSMLFGSEYFEWKKRFNVAVGVAEGLLYLHQDCPRRIIHRDIKASNILLNDNYEAEISDFGLAKWLPGKWSHHVAFPIEGTFGYLAPEYFMHGVVDEKTDVFAFGVLLLELITGRRAVDSDSRQSLVVWAKPFLETNNVKEIADPRLGEEYDPTEMNLVMVVASMCVHHVSSMRPYMDHVVKLLKGEAAIELKQSSGSSKSLLLEACDLENYTCSNYLKDLNRHKQLLME 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0500 482 ProSitePatterns Protein kinases ATP-binding region signature. 175 197 IPR017441 GO:0005524
Lal16g0500 482 SMART serkin_6 169 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0500 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Lal16g0500 482 MobiDBLite consensus disorder prediction 42 82 - -
Lal16g0500 482 SUPERFAMILY Protein kinase-like (PK-like) 152 453 IPR011009 -
Lal16g0500 482 MobiDBLite consensus disorder prediction 10 83 - -
Lal16g0500 482 MobiDBLite consensus disorder prediction 13 41 - -
Lal16g0500 482 Gene3D Transferase(Phosphotransferase) domain 1 248 454 - -
Lal16g0500 482 Pfam Protein kinase domain 170 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0500 482 PANTHER OS08G0249100 PROTEIN 26 482 - -
Lal16g0500 482 Gene3D Phosphorylase Kinase; domain 1 129 244 - -
Lal16g0500 482 ProSiteProfiles Protein kinase domain profile. 169 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0500 482 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 26 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0500 Lal-Chr16 3165602 3169239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0500 157 432 Trihelix Transcription Factor Family AT1G68690 44.755 4.46e-68 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lal16g0500 Pkinase 5.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0500 - - gmx:100818314 659.833