Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0499 ATGGATACAACCCCAACACAGAAAATCTATGTTGCTGTTGGTAATGATGTGCAAGATGGATTAAAGACTTTGGCTTGGGCTCTCAAGAAATGGAATTCTCAACCAGTTTCCATTGTTATTCTTCACGTGTCTTACAACATTTCAATGGATTATGTTTATACACCATTTGGGAAACTTCCAGCAAGTTCTGTGAATGATGAAAAACTTGAAGTTCTCAGGAAATATGAGGAAGACAAAATCAACAAGTTGCTTTCCAAATATGTTGCTTTGTGTGGCAAGGTTCCTGTAGAAATTCTTAAAGTAGAGAAGTTTGATGAACCTATGCAAAAGCACATCATTGACTTGATCATTGGTCTAGGAGTGACCAAATTGGTCATGGGATTTTCATTCATGAAGCCATCCTTGAAATCAAAAGGTGCCATGAGTGGATTGTTCTATGTTCATCAGCACAAGCCTGGTTTCTGTGAATTGTTCATTATTTGTGGAGGGAAACAAGTGTTCCTCAGAGGAAAGAATGATGAGAAAATCACGGAGGATGATAATGAAGTCATGGTTGAAAAAATGAAAGATAAGATAACTTTCAAAGATTGGCTAGACAAAATGTTCAATGATAAAACCAATGGCTCCCCAGATAGAATTGCATCAACTTCCACAACAAATTTGGAGTCCCATGTGACCCAAAGCCAGTGGGAATTATATCTTCAAGAAATTGAGAGCTATTATCAAGAATTGCTGTCTTCAGATTTGTATGAAGAAGGTTGCAACCATGACAATGACAACTTGGAGATTAGGCCAATTGAGCCAGATGTCATTGAAAGTAATACTTCTAACAAGAGTACTGCTGCAGAAAAAATTGAGATCCTAAAGAGTAAATTGGATGAAGCTCTCAAGACAATCCAATTGAAGAGGAAAGAAGCCAAGGAAAATATAGAGAGACAAGAAAAAGCTCAATGGTCAATCTGTTTATGCAACACTAGGATTGAAGAACTTGAGTCTAAGATAAATGAAGAAGTGAGTGTAAGGGAAGAGCTAAAGAAGGAAGTGGAAGCAGAAAAAGAACAAGTATATGAGATGAGAATGGATTATGAAGAGAAGAAGAGGAGGGTGAGTTCACTATCAGAGCTACAAAGTGACCTCTCAAACATGGTTCACATTTCTACATTGGCAAAGTCAAGAGCTGAGACACAACTAGAGAGAGCAGTGGAAGAGAGAACAAGGATGGTGAGGGAGATAGAAGAGCTTAGAAGACAAAGGGATGTGCTGAATAGAAGGATTGAGTTTTGCAAGCAAAAAGATGCTATTGGAATGGCTGCAAGGTTGAGTGAGACATGTTCTAGCTTTAGAGAGTACAGTGATGAAGAACTAAGGTTGGCCACAGACAATTATTCAGAAAGGTTGAGATTGAAATCTAGTGGTGATTTTACCAATGTTTATAGAGGACACCTTAATCATTTCACTCTTGCAATCAAGATGCTTAACTCTTTTCCTTCTTTGTCCCAACAAGATTTCCAATATAAGGTAAGGCTTCTAGGTGATATTAGGCATCCACATCTAGTTTCCATGGTGGGCTTATGCAAAGATCCCAAATGTATAGTCATGGAATACATGCACAATGGAAGCTTACAAGACATGCTATTTTCTAGGAGAAGAAGTCGGGCTTTACGTTGGCACGAGCGGATACGAATAATGACAGAAGTTTGCACGGGCTTGGGCTTTCTCAATACAGGTCAGTCAAGGCCCGTTATTCATTGCCATTTGACCCCATCCAACGTCCTCCTAGACCGCAATCTTGTTGCAAAGATCACGGGATTTGGGCTTCATGAATGTCATGATGAGGAATGCAACATTGAGTCAGATATCCGGGCCGTAGGAATCTTCTTGATTCATCTTTTGACTGGAAGGAACTATGCCGGGCTTGTTGATGTAGTGGAGTTGAGTAGAGAGGCTGTGGTTAGTGGTCTTGATGAGATGGCTGGTCAATGGCCATTGGATCTAACAGAAGAACTTGTGGGCCTAGCAATGAGGTGCATGTCCATTAAAAGTAAGCCCAAGTCAGAAATGAGCATTGCAAGGGTGATAGAGGAACTGAGTGAGGTGAGAAGAAAGGGTGATGAAATAGTTGCAAGGGAAGGAAGAAAGGTAATCATTGATAGAGAGGGCCCTGCTGATGTGCCTGCTGTTTTCCTTTGCCCTATACTTCAGGATGTAATGAAAAACCCACATGTAGCAGCAGATGGATTTTCATATGAGGTGGAAGCAATAGAACAATGGTTGAATTCAGGACATGATACATCACCTATGACTAACTTAAGGCTCAATCACACATTCCTTACTCCTAATCACACCCTTCGTTCCCTTATTCAGGACTGGCGAACCAACACATCAAACTAA 2391 0.4023 MDTTPTQKIYVAVGNDVQDGLKTLAWALKKWNSQPVSIVILHVSYNISMDYVYTPFGKLPASSVNDEKLEVLRKYEEDKINKLLSKYVALCGKVPVEILKVEKFDEPMQKHIIDLIIGLGVTKLVMGFSFMKPSLKSKGAMSGLFYVHQHKPGFCELFIICGGKQVFLRGKNDEKITEDDNEVMVEKMKDKITFKDWLDKMFNDKTNGSPDRIASTSTTNLESHVTQSQWELYLQEIESYYQELLSSDLYEEGCNHDNDNLEIRPIEPDVIESNTSNKSTAAEKIEILKSKLDEALKTIQLKRKEAKENIERQEKAQWSICLCNTRIEELESKINEEVSVREELKKEVEAEKEQVYEMRMDYEEKKRRVSSLSELQSDLSNMVHISTLAKSRAETQLERAVEERTRMVREIEELRRQRDVLNRRIEFCKQKDAIGMAARLSETCSSFREYSDEELRLATDNYSERLRLKSSGDFTNVYRGHLNHFTLAIKMLNSFPSLSQQDFQYKVRLLGDIRHPHLVSMVGLCKDPKCIVMEYMHNGSLQDMLFSRRRSRALRWHERIRIMTEVCTGLGFLNTGQSRPVIHCHLTPSNVLLDRNLVAKITGFGLHECHDEECNIESDIRAVGIFLIHLLTGRNYAGLVDVVELSREAVVSGLDEMAGQWPLDLTEELVGLAMRCMSIKSKPKSEMSIARVIEELSEVRRKGDEIVAREGRKVIIDREGPADVPAVFLCPILQDVMKNPHVAADGFSYEVEAIEQWLNSGHDTSPMTNLRLNHTFLTPNHTLRSLIQDWRTNTSN 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0499 796 Gene3D Transferase(Phosphotransferase) domain 1 448 706 - -
Lal16g0499 796 Pfam Protein tyrosine and serine/threonine kinase 471 611 IPR001245 GO:0004672|GO:0006468
Lal16g0499 796 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 6 791 - -
Lal16g0499 796 SUPERFAMILY Protein kinase-like (PK-like) 444 682 IPR011009 -
Lal16g0499 796 Coils Coil 327 365 - -
Lal16g0499 796 ProSiteProfiles U-box domain profile. 723 796 IPR003613 GO:0004842|GO:0016567
Lal16g0499 796 PANTHER OS02G0152300 PROTEIN 6 791 - -
Lal16g0499 796 SMART Ubox_2 727 790 IPR003613 GO:0004842|GO:0016567
Lal16g0499 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 722 796 IPR013083 -
Lal16g0499 796 Coils Coil 390 431 - -
Lal16g0499 796 CDD RING-Ubox_WDSUB1_like 728 769 - -
Lal16g0499 796 SUPERFAMILY RING/U-box 720 793 - -
Lal16g0499 796 ProSiteProfiles Protein kinase domain profile. 463 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0499 796 Coils Coil 278 316 - -
Lal16g0499 796 Pfam U-box domain 724 794 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0499 Lal-Chr16 3156883 3162669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0499 7 792 U-box Gene Family AT5G65500 48.750 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lal16g0499 PK_Tyr_Ser-Thr 9.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0499 - - gmx:100786771 1183.32