Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0491 ATGGCGAGGGAGAAGATTCAGATTAAGAAAATCGATAACATCACAGCGAGGCAGGTGACTTTCTCGAAGAGACGCAAAGGGTTGTTCAAAAAAGCTAAGGAACTCTCAGTTCTGTGTGATGCTGATGTTGCTCTCATTATCTTCTCTTCTACTGGGAAGCTTTTTGAGTACTCCAGCTCAAGCATGAAAGAAATACTTGAAAAGCATCATTTGCACTCAAAGAATCTTGCAAAAATGGAACAACCGTCTCTCGAGTTGCAGCTAGTTGAAAACAGCAACTACACTATATTGAGAAAGGAAGTTGCTGAGAAAAGCCACCAATTAAGGCAGATGAGAGGAGAGGATCTGCATGGTTTAGATATCGATGAATTACAACAATTGGAGAGATCTCTAGAAGATGGACTGGGGCGTGTTATACAAAAGAAGGGAGAGAAGATTATGAATGAGATCACTGATCTCCAAACAAAGGTGGCAAACATAACTAATGGACAAAGGCATGAGTGTGAGAATTTAGCTGGTGGGGAAGGTCAATCTTCAGAGTCTGTCACTAACATTTGCAACTCCACTGGATCTCCCCATGACTACTCTGATAGCTCTTACACCTCCCTTAAGTTAGGGCTACCATACCAAGGCTGA 636 0.4214 MAREKIQIKKIDNITARQVTFSKRRKGLFKKAKELSVLCDADVALIIFSSTGKLFEYSSSSMKEILEKHHLHSKNLAKMEQPSLELQLVENSNYTILRKEVAEKSHQLRQMRGEDLHGLDIDELQQLERSLEDGLGRVIQKKGEKIMNEITDLQTKVANITNGQRHECENLAGGEGQSSESVTNICNSTGSPHDYSDSSYTSLKLGLPYQG 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0491 211 Pfam K-box region 92 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal16g0491 211 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 208 - -
Lal16g0491 211 MobiDBLite consensus disorder prediction 171 211 - -
Lal16g0491 211 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Lal16g0491 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal16g0491 211 MobiDBLite consensus disorder prediction 174 211 - -
Lal16g0491 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal16g0491 211 ProSiteProfiles K-box domain profile. 87 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal16g0491 211 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Lal16g0491 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 208 - -
Lal16g0491 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal16g0491 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal16g0491 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal16g0491 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal16g0491 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal16g0491 211 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0491 Lal-Chr16 3103851 3107760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0491 1 211 MADS-box Gene Family AT2G22540 62.241 3.02e-96 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal16g0491 K-box 7.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0491 - - qsu:112018313 323.553