Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0482 ATGGCTTGTAAGATGGGGAAACAGGTTTTCTTCCTATGGTGGGTTGGAATGGCTGCACAACTCTTCTTCTTGCTCGGTGTGTCTCCTAAGAAGACCTCATTTAGAAGAAATATAAGGGAGATCAACAGTAGCCTAATTCATTTTCCATCCAGCATGAATACAATACATCACCATCAGGTGGTAATTGACAATGGCATCGTTTCCGTTAAGTTGGCAAACCCCAAGGGCTATGTCGTTGGAATATCATATTCAGGAATTGACAATCTCCTCGATAATAAACTTAAAGAAAACAATAGAGGGTACGTCGATGTTGTTTGGAATAAAACTGGAAGAGAAGCTCATACCTTTGAGAGAATGCATGGGACACATTTTTCAGTCATAAAAGCTGATGAGGATATGGTGGAGGTTTCATTTTCAAGAAGATGGACATCTTCTATGGGAGGCTCAAGTGTCCCCTTAAGCATAGATAAAAGGTATATACTGCGAAAAGGCGATTCAGGGTTTTATTCATATGTAATATTTAATCGTCTATCCGGATTTCGTGGAGCAAAGATATCTCAAATTAGATCGGTTTTCAAGCTCCATAAAAGTTTCCGCTACATGGCCATATCAAATACTAGACAAAGGAACATGCCAACAGCTAAAGATAGATCTACTGGTAAAACATTGGCATATCCCGAAGCTGTTCTTATAACTAATCCATCTAACCCACAATTTATGGGAGAGGTGGATGACAAATACCAATATTCAAGTGAAAACAAAGACAACACTGTTCATGGTTGGATTACCAAAGATTCTAAAGCAACCGTAGGCATTTGGACTATAACACCTAGTAATGAGTTCCGTAATTGTGGTCCCATCAAACAAGACCTCACTTCTCACTTAGGCCCAACTTTCCTCAATATGTTTATGAGTACACACTATGCTGGAAAGAATGTAGCAATGTCATTTTATGAAGGAGAGACTTATAAAAAGGTTTTCGGTCCTTTTTATACTTATCTTAACTCTGCTTCAAGTAATGCTACATTTGGATCTCTGTGGTCAGATGCTGCACGAAAGAGATCCCAAGAAGTCCAAAACTGGCCTTATGTTTTCCCTCGATCAAAAGATTTCATTCCACCCAATCACCGGGGAACAGTAGAAGGATGGTTTAGAATCCAAGATAGGTTCTTAACCATAGAGGAATCTCTACCTGCTGCCAATGCTTACATTGGTCTAGCTTTGCCTGGAGATGCAGGATCATGGCAAGAAGAAAGTAAGGGTTATCAATTCTGGACTCGAACTGATGGGAATGGACACTTTGCAATAAAAAATATTGTGCCTGGAAAATATAATTTATATGCATGGGTTCGTGGCTTTATTGGTGATTACAAATATGAGGCTATAATCACTATCACACCAGGATGTGTCATCACCTTGGATTCACTTGTATATATTCCTCCAAGAAATGGCCCCACCCTTTGGGAAATTGGCATCCCAGATCGTTCAGCTGCAGAATTCTATATACCAGACCCTGAGGCGACGCTCACTAACAACTTATTCAAGAATCTTGACAAAGAAAAGTTTAGACAATACGGGTTGTGGGCACGTTACTCAGATTTATATCCATATAATGATCTTGTCTACACTGTTGGTGTTAGTGACTATAGAAAGGATTGGTTTTTTGCTCATGTTAGCAGGAGCATAGGTAATACTTATCAGCCAACCACATGGCAGATTATATTTGAACTTCAAAATAACACATTGAGAGAAGGAGACTACATGCTACAATTGGCCCTGGCATCGGCCACTGGAGCCGAAGTGCAGGTTCGGGTCAATGATCCAGGATATTATTCTCCCCTCTTCACAACCGGGTTAATAGGTGATGACAATGCCATAGCAAGGCATGGAAACCATGGATTGTACTGGTTGTATAGCATACATATACGTAGCAGTCATTTGGTGGAAGGAAAGAACACCATCTATCTGAGGCAAGCAAGAGCTGCAAGTCCTTTTATAGGAGTTATGTATGATTATATCCGCTTAGAAAGTCCTGCGCCTCTGAATGCTTGA 2052 0.4025 MACKMGKQVFFLWWVGMAAQLFFLLGVSPKKTSFRRNIREINSSLIHFPSSMNTIHHHQVVIDNGIVSVKLANPKGYVVGISYSGIDNLLDNKLKENNRGYVDVVWNKTGREAHTFERMHGTHFSVIKADEDMVEVSFSRRWTSSMGGSSVPLSIDKRYILRKGDSGFYSYVIFNRLSGFRGAKISQIRSVFKLHKSFRYMAISNTRQRNMPTAKDRSTGKTLAYPEAVLITNPSNPQFMGEVDDKYQYSSENKDNTVHGWITKDSKATVGIWTITPSNEFRNCGPIKQDLTSHLGPTFLNMFMSTHYAGKNVAMSFYEGETYKKVFGPFYTYLNSASSNATFGSLWSDAARKRSQEVQNWPYVFPRSKDFIPPNHRGTVEGWFRIQDRFLTIEESLPAANAYIGLALPGDAGSWQEESKGYQFWTRTDGNGHFAIKNIVPGKYNLYAWVRGFIGDYKYEAIITITPGCVITLDSLVYIPPRNGPTLWEIGIPDRSAAEFYIPDPEATLTNNLFKNLDKEKFRQYGLWARYSDLYPYNDLVYTVGVSDYRKDWFFAHVSRSIGNTYQPTTWQIIFELQNNTLREGDYMLQLALASATGAEVQVRVNDPGYYSPLFTTGLIGDDNAIARHGNHGLYWLYSIHIRSSHLVEGKNTIYLRQARAASPFIGVMYDYIRLESPAPLNA 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0482 683 Gene3D - 52 347 IPR014718 GO:0030246
Lal16g0482 683 Gene3D - 484 676 - -
Lal16g0482 683 SUPERFAMILY Galactose mutarotase-like 57 338 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lal16g0482 683 Pfam Polysaccharide lyase family 4, domain III 486 675 IPR029411 -
Lal16g0482 683 Gene3D - 373 475 - -
Lal16g0482 683 SUPERFAMILY Starch-binding domain-like 376 475 IPR013784 GO:0030246
Lal16g0482 683 CDD RGL4_N 59 339 - -
Lal16g0482 683 CDD RGL4_C 488 676 - -
Lal16g0482 683 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 51 679 - -
Lal16g0482 683 CDD RGL4_M 377 476 IPR029413 -
Lal16g0482 683 Pfam Polysaccharide lyase family 4, domain II 401 473 IPR029413 -
Lal16g0482 683 Pfam Rhamnogalacturonate lyase family 41 243 IPR010325 -
Lal16g0482 683 SUPERFAMILY Galactose-binding domain-like 483 676 IPR008979 -
Lal16g0482 683 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 51 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0482 Lal-Chr16 3012810 3028021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0482 58 679 Polysaccharide Lyase AT1G09890 54.459 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0482 K18195 - gmx:100776664 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0482 16 3012810 3028021 Lal23g1092 23 12559834 12567000 LSH
Lal16g0482 16 3012810 3028021 Lal16g1717 16 16147165 16153796 PCT
Lal16g1717 16 16147165 16153796 Lal16g0482 16 3012810 3028021 PCT