Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0479 ATGGAGCTTTCACAACTTGGTTTTCTAGAGGAACTACTAGCTCCAAGAAGAGACACTTGGAATAATGCTTTGTCTACTGGGTTGAATGAACTATTCCCTAGTGGTTGGAGTTTTGACTCTTTTGATGATAATCCTTCTTTATCTACTATGAGTCCCTCATTTCCTGCATTCTCAACACCAATAGATCATAGATTTGAATGCCCTTATGGAAATGAAACACCATATCCATTTGTTGATGGGTTCACAATGCCAGAGCTTGATTCATCATATACCAGGAATGATGACACAACACCACTCTTACCACAACAAGATAATATTAACCCATCAATGCATGATGAAGAGCTTGGATTTTTTGGAAGTGATTACATGAGTTTGGAAGACAGAACTGATGGCTGCAAAGTTGAGGAACAAGCTTCAGAGATTCCAGTTTTCAACATGGGCATTTGTGGAGAGAGAAAAACAAAGTATAAGAAAGTAGAAGGGCAACCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGGAAACGTCTCAATGATAGGCTTTCTATGCTAAGGTCCATAGTCCCTAAAATCAGCAAGATGGACAGGACTTCCATTCTTGGAGATACCATTGATTATATGAAAGAGCTTCTAGAAAGGATAGGAAAGTTGCAAGAAGAAGAAATGGAGGAGGGGACTAGTCAAATAAACATTCTGGACTTTTCTAAGGAACAAAAGCCAAATGAAGGAATGGTAAGAAATTCCCCCAAGTTTGATGTTGAGAGGAGAGACAAGGATACTAAGATAAGCATTTGCTGTGCCACAAAACCTGGGTTATTACTCTCAACAGTGAACACCTTAGAAGCACTGGGCCTTGAGATTCACCAGTGTGTTATAAGCAGTTTCAATGATTTCTCATTGCAAGCATCTTGCTCAGAGGTAGTTGAACAAAGGAACTGTATTAGCCCTGAAGACATAAAGAAAGCACTATTCAGAAATGCAGGTTATGGTGGGAGATGTCTCTAG 1005 0.396 MELSQLGFLEELLAPRRDTWNNALSTGLNELFPSGWSFDSFDDNPSLSTMSPSFPAFSTPIDHRFECPYGNETPYPFVDGFTMPELDSSYTRNDDTTPLLPQQDNINPSMHDEELGFFGSDYMSLEDRTDGCKVEEQASEIPVFNMGICGERKTKYKKVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEMEEGTSQINILDFSKEQKPNEGMVRNSPKFDVERRDKDTKISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEVVEQRNCISPEDIKKALFRNAGYGGRCL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0479 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Lal16g0479 334 CDD ACT_UUR-ACR-like 260 301 - -
Lal16g0479 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 222 IPR036638 GO:0046983
Lal16g0479 334 SMART finulus 167 216 IPR011598 GO:0046983
Lal16g0479 334 PANTHER - 2 334 - -
Lal16g0479 334 Pfam Helix-loop-helix DNA-binding domain 167 210 IPR011598 GO:0046983
Lal16g0479 334 Gene3D - 153 225 IPR036638 GO:0046983
Lal16g0479 334 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0479 Lal-Chr16 2993256 2995021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0479 152 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 69.022 1.65e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal16g0479 HLH 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0479 - - gmx:100806571 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0479 16 2993256 2995021 Lal15g0419 15 2854006 2856841 LSH
Lal16g0479 16 2993256 2995021 Lal23g1104 23 12662783 12664654 LSH