Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0475 ATGGCGATGCGGGGCTATGACAGAGAAGAACCTGAGGATTATGGTGATCACGATGATTATGGGGGTGAAGAATATGAAGAATATGAAGAAGAAGAAGAGGAGGAATATAAAGAGGAAGAACCTCGCAAGCCCACAAAGGAAGAACTGGACTACCTTGTATTGAGGCAAAGGTTGAAGGAATCATTCAGAAAACAGATGAAGAAGGAGAGTAGTTCTTCCCTCACAGATTCCAGTGGTAGAAAGAAGAAACTTCCTTATGATAATTATGGATCCTTTTTTGGCCCTTCTCAACCAGTTATTGCTCAGAGAGTAATCCAAGAGAGCAAGTCATTGGTAGAAAACCAGCATCTATCGTCCAGGCCGTCTAACTCAACTCACACTGTGAATGATTATTGTGTTAACTTTTCACATTTAAAGCTTGTTAAGCTTAACAAGAACACAAATAGAGTTCCTAATGGAGGATTGAAGTCTTCATCTCATAGTCAGGCACCACCCAAAATCAGTGAGAAGATAGCTAAAGCCCAAAAAATCAAGGGTACTAGAGATTACTCGTTTCTTTTGTCTGATGATGCTCCAGTGCCTAAGAAAGAGGCCCCTCCACAGAATATATCTATGCGCAATTCTGAGGGACGACCAGCCCAAGTTACAGGGAAGAGTAAACAACCTATGATGAGTGGTGGCAAACTTGTTCGTGGCAGTGGCGAGGACCGGAAATCTGTTTCTGGGGCTAGTCATTTGTGTCATCAATCAGGGTCCAACTATAAGTTAACCTCTGCCAGTAAGGCCGGTAATGCATCAGCTGATTCTAGAAAACAGCTCAGTAGCAGCAGTGGTAATAGACCAGCTGTTTCTAGAAAACAGCTTGCTAGCAATAGTGGTAATGGGCCAGGTGATTCTAGAAGACAGCTTGGTAGCAACAGTGGTAGTGGACCTGGCCGGCCAGTGGGGCCAAAAGGCCTGCCTTCAAAGAAGCCTGTTATTACCATGATGAATACATCATCTATACCTGGTATTAGAAGCCTTGTAAATGGTGTGCACAGACCGATGCCTTCAAAAGTACATCTGTCTGTTCCAAAGCAGAATGTCGAACAAAGAAAGGACTTACGAGAACAGAATAAACCTAAGTTGGTACCAAGACAGCCATTAGTATCATCAAAAGCTCAGGTAAATAAGCCACCACTTAAGCAAAATCCAATGCATTCTAAGTCGCAAGATCATCACCCTAGGAATAAGATTGTGAAACGATGCACGGATGATGATGGAGAGGATGGAATTGATATTAGGAGTATGATCAGATCAATGTTTAATTTTCCCATGCCATCCTTTGATAGAAGGGAAATGGATGGTGAGTCTCATCGTAACGTTAAGATGGGAGATGTGGCTAAGGACCTTACAGCTGGGACTGTTGGAGGGGCAGCACAGTTGATAACTGGACACCCCTTTGACACCATCAAGGTCAAGCTCCAAAGTCAGCCTACACCACTCCCCGGCCAGCTTCCTAAGTATTCTGGTGCAATTGATGCTGTCAAGCAGACAATAGCGGCAGAAGGCCCAAGGGGTTTATACAAAGGTATGGGAGCCCCACTTGCTACGGTGGCCGCCTTTAATGCTGTCCTTTTCTCAGTAAGGGGGCAAATGGAGGCAGTGCTGAGGTCCCATCCTGGTGCCCCCCTCACAATAAGTCAGCAAGTTGTTGCCGGAGCTGGTGCTGGAGTTGCTGTTTCCTTTCTAGCTTGCCCCACTGAACTGATCAAATGCAGGTTGCAAGCACAAAGTGCACTCGCTGGTTCTGGAACAGCTACATTGGCAGTGAAATATGGAGGACCAATGGATGTAGCCAGACAGGTTCTCAGGTCAGAAGGCGGTGTAAAAGGCCTATTCAAGGGCTTGGCTCCCACTATGGCACGTGAAATACCAGGAAATGCTGCCATGTTCGGTGTATATGAATCATTAAAGCAATATCTTGCAGGAGGCCCTGATACCTCTGGACTAGGTAGAGGTTCTCTAATTGTTGCTGGTGGTTTGGCTGGAGCTTCTTTCTGGGTCATGGTTTACCCAACTGATGTTGTTAAGAGTGTGATTCAAGTCGATGATTATAAAAGTCCGAAGTTTTCTGGTTCAATTGATGCGTTGCGAAAGATTCGGGCTACTGAAGGATTCAAAGGCCTTTACAAGGGTTTTGGTCCAGCAATGGCCAGAAGTGTTCCTGCAAATGCAGCATGCTTCTTGGCATATGAGATGACAAGATCAGCTCTGGGGTGA 2262 0.4536 MAMRGYDREEPEDYGDHDDYGGEEYEEYEEEEEEEYKEEEPRKPTKEELDYLVLRQRLKESFRKQMKKESSSSLTDSSGRKKKLPYDNYGSFFGPSQPVIAQRVIQESKSLVENQHLSSRPSNSTHTVNDYCVNFSHLKLVKLNKNTNRVPNGGLKSSSHSQAPPKISEKIAKAQKIKGTRDYSFLLSDDAPVPKKEAPPQNISMRNSEGRPAQVTGKSKQPMMSGGKLVRGSGEDRKSVSGASHLCHQSGSNYKLTSASKAGNASADSRKQLSSSSGNRPAVSRKQLASNSGNGPGDSRRQLGSNSGSGPGRPVGPKGLPSKKPVITMMNTSSIPGIRSLVNGVHRPMPSKVHLSVPKQNVEQRKDLREQNKPKLVPRQPLVSSKAQVNKPPLKQNPMHSKSQDHHPRNKIVKRCTDDDGEDGIDIRSMIRSMFNFPMPSFDRREMDGESHRNVKMGDVAKDLTAGTVGGAAQLITGHPFDTIKVKLQSQPTPLPGQLPKYSGAIDAVKQTIAAEGPRGLYKGMGAPLATVAAFNAVLFSVRGQMEAVLRSHPGAPLTISQQVVAGAGAGVAVSFLACPTELIKCRLQAQSALAGSGTATLAVKYGGPMDVARQVLRSEGGVKGLFKGLAPTMAREIPGNAAMFGVYESLKQYLAGGPDTSGLGRGSLIVAGGLAGASFWVMVYPTDVVKSVIQVDDYKSPKFSGSIDALRKIRATEGFKGLYKGFGPAMARSVPANAACFLAYEMTRSALG 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0475 753 ProSiteProfiles Solute carrier (Solcar) repeat profile. 458 549 IPR018108 -
Lal16g0475 753 ProSiteProfiles Solute carrier (Solcar) repeat profile. 664 751 IPR018108 -
Lal16g0475 753 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 457 753 - -
Lal16g0475 753 MobiDBLite consensus disorder prediction 359 374 - -
Lal16g0475 753 SUPERFAMILY Mitochondrial carrier 459 746 IPR023395 -
Lal16g0475 753 MobiDBLite consensus disorder prediction 243 309 - -
Lal16g0475 753 MobiDBLite consensus disorder prediction 62 82 - -
Lal16g0475 753 ProSiteProfiles Solute carrier (Solcar) repeat profile. 558 654 IPR018108 -
Lal16g0475 753 MobiDBLite consensus disorder prediction 1 50 - -
Lal16g0475 753 MobiDBLite consensus disorder prediction 201 221 - -
Lal16g0475 753 MobiDBLite consensus disorder prediction 349 408 - -
Lal16g0475 753 Gene3D Mitochondrial carrier domain 427 752 IPR023395 -
Lal16g0475 753 MobiDBLite consensus disorder prediction 383 399 - -
Lal16g0475 753 Pfam Mitochondrial carrier protein 460 551 IPR018108 -
Lal16g0475 753 Pfam Mitochondrial carrier protein 670 752 IPR018108 -
Lal16g0475 753 Pfam Mitochondrial carrier protein 558 656 IPR018108 -
Lal16g0475 753 MobiDBLite consensus disorder prediction 185 327 - -
Lal16g0475 753 MobiDBLite consensus disorder prediction 12 37 - -
Lal16g0475 753 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 457 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0475 Lal-Chr16 2939561 2946826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0475 477 752 Antiporters AT1G79900 33.922 1.08e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0475 K15109 - gmx:100781634 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0475 16 2939561 2946826 Lal16g0475 16 2939561 2946826 ECH
Lal16g0475 16 2939561 2946826 Lal23g1107 23 12685075 12687430 LSH