Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0469 ATGAATCTGTGGACTGACGACAACTCCTCCGTCATGGAGGCTTTCATTACCACCACCTCTTCCTCCGACCTCTCCTCTCTCTGGCCACCACTTACACCGTCACTTCCTCAACAACAACAACAACAACAACAACAACAACAACCCCTTTTCAACCAAGACACCCTCCAGCAACGTCTCCAAGCTCTCATCGAGGGCCACGCCACTCACATATGGACATATGCTATATTCTGGCAATCATCTTATGATGACTATTCATCTTCCTCTACTCTTCTCGCATGGGGAGATGGTTACTACAAAGGCGACGAAGACAAATCAAAACCCAATAACAATAACAATAAGAAGGCTTCATCTGCTGAACAAGACCACCGGAAGAAAGTACTTCGTGAACTCAACTCTCTCATCTCCGGTTCTTCAATTGAAAACGACACCGTTGATGAAGAAGTCACCGACACCGAGTGGTTCTTCCTTGTTTCCATGACTCAGTCCTTTGCCAATGGTTCTGCGTTACCTGCTCAGGCTTTCTTTAACTCCACCCCGGTTTGGGTCTCCGGTTCAGACCGTTTGGCTGGGTCGGGTTGCGAAAGAGCCAGACAGGCGCAGGTTTTTGGGCTTCAAACCATAGTTTGTATACCGGCGGCGAATGGGGTTGTTGAGCTGGGGTCCACTGAAATGGTTTTCCAAAACCCGGATCTAATGAACAAGGTAAGATTCTTGTTCAATTTCAACAACAACAGCAATAATCATATGGGTTCATGGCCCTTCGCCGCTAGCACCACCACTACAACCACGGATCAAGGTGAGAACGACCCTTCTTCTCTTTGGCTCAATGATCATGAAATTAGGGATTCCGTGAATGTGAATGCAAACAACACTGTTGTTGCTCCCGCTGCTGGTAGCGTTTCTGTTTCTGTTTCTATTCCGAGTTTGAACAATAGTCATATCAATAACAACAATCAGGTTATTCTCAAAACGACGCAGCTTGACACCCCGGGTTCTAGTACCTTGACCGAAACCCCGAGTGCCATTAACTTCCCTAGTAGGTCTCCTCATCAGCACCAACAGAGCTTCTTTTCGAGGGAATTGAACTTTTCCGCTTATGGGTTTGAAGGAAATGGTGTGAAGAATGGGGACAACCAGCATAACCATCATTCTCTGAAGCCAGAATCCGGTGAGATTTTGAGCTTTGGAGAGACTAAGAAGAGTTCTTACGCCGGCGCAAATGGAAATTCGTCTCATTTTTTATCTGGGCAGTCTCAATTTGCTGCTGCAGCTCCAGCTGTAGACGAGAATAGCAAGAAGAGGAGGTCCCCAACTTCGAGGAGCAGCAATGATGATGGCATGCTTTCCTTCACCTCTGGTGTTGTTTTGCCGTCTTCAACTTCGAATATGAGGTCTGATGGTGGTGGCAGTGGTGATTCTGACCATTTAGATCTTGAGGCTTCTGTGGTGAAGGACCCTGAAAGCAGTAGAGTGATGGAACCAGAAAAACGACCCCGGAAAAGAGGGAGGAAACCTGCAAATGGCAGAGAGGAACCATTGAATCACGTTGAAGCAGAAAGGCAGAGGAGGGAGAAGCTGAACCAGAGATTCTATGCGCTTCGTGCGGTGGTTCCAAATGTGTCAAAGATGGACAAAGCATCGCTTCTTGGAGATGCCATTTCTTACATTACTGAGCTGAAATCTAAGCTTCAGAACCTTGAATCAGATAAAGATGGTTTGGAGAAGCAATTGGATGCAGTGAAGCAGGAACTCGAGAAAACCACTAAAGATTCGGGTGCACCAGTTCCACCTGATAAGGAATTGAAGATGTTGAATAATGTTGGAAGCAGTAAGCTGATTGATTTGGACATCGACGTGAAGATTATTGGTTGGGATGCAATGATAAGGATCCAATGTAGCAAGAAGAATCACCCTGCTGCGAGGTTGATGGCAGCTTTGATGGAATTGGAATTGGATGTGCACCATGCCAGTTTGTCTGTGGTGAATGATTTGATGATCCAACAAGCAACCGTGAAGATGGGAAGCAGGTTTTATACACAGGAGCAGCTACACGCTGCATTGTCATCCAAAGTTTCTTTTGGGAAGCTAGCTTTAGTCTTAATTATGAGGGCAGTAGCAAGCAGGACCCCATTTGAAACGGGAGCTAAAAAGAGTGGTTCTTTATATTGA 2169 0.461 MNLWTDDNSSVMEAFITTTSSSDLSSLWPPLTPSLPQQQQQQQQQQQPLFNQDTLQQRLQALIEGHATHIWTYAIFWQSSYDDYSSSSTLLAWGDGYYKGDEDKSKPNNNNNKKASSAEQDHRKKVLRELNSLISGSSIENDTVDEEVTDTEWFFLVSMTQSFANGSALPAQAFFNSTPVWVSGSDRLAGSGCERARQAQVFGLQTIVCIPAANGVVELGSTEMVFQNPDLMNKVRFLFNFNNNSNNHMGSWPFAASTTTTTTDQGENDPSSLWLNDHEIRDSVNVNANNTVVAPAAGSVSVSVSIPSLNNSHINNNNQVILKTTQLDTPGSSTLTETPSAINFPSRSPHQHQQSFFSRELNFSAYGFEGNGVKNGDNQHNHHSLKPESGEILSFGETKKSSYAGANGNSSHFLSGQSQFAAAAPAVDENSKKRRSPTSRSSNDDGMLSFTSGVVLPSSTSNMRSDGGGSGDSDHLDLEASVVKDPESSRVMEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQNLESDKDGLEKQLDAVKQELEKTTKDSGAPVPPDKELKMLNNVGSSKLIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELELDVHHASLSVVNDLMIQQATVKMGSRFYTQEQLHAALSSKVSFGKLALVLIMRAVASRTPFETGAKKSGSLY 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0469 722 MobiDBLite consensus disorder prediction 421 520 - -
Lal16g0469 722 CDD bHLH_AtAIB_like 507 583 - -
Lal16g0469 722 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 510 559 IPR011598 GO:0046983
Lal16g0469 722 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 55 239 IPR025610 -
Lal16g0469 722 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 513 581 IPR036638 GO:0046983
Lal16g0469 722 MobiDBLite consensus disorder prediction 22 48 - -
Lal16g0469 722 MobiDBLite consensus disorder prediction 100 122 - -
Lal16g0469 722 Coils Coil 556 590 - -
Lal16g0469 722 Gene3D - 502 591 IPR036638 GO:0046983
Lal16g0469 722 SUPERFAMILY beta-sandwich domain of Sec23/24 33 635 - -
Lal16g0469 722 PANTHER TRANSCRIPTION FACTOR MYC2 33 692 - -
Lal16g0469 722 SMART finulus 516 565 IPR011598 GO:0046983
Lal16g0469 722 MobiDBLite consensus disorder prediction 470 520 - -
Lal16g0469 722 Pfam Helix-loop-helix DNA-binding domain 514 559 IPR011598 GO:0046983
Lal16g0469 722 MobiDBLite consensus disorder prediction 441 468 - -
Lal16g0469 722 PANTHER MYC 33 692 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0469 Lal-Chr16 2918156 2921546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0469 1 691 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 52.045 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal16g0469 bHLH-MYC_N 1.1e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0469 K13422 - gmx:100776289 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0469 16 2918156 2921546 Lal16g0469 16 2918156 2921546 ECH
Lal16g0469 16 2918156 2921546 Lal23g1116 23 12718548 12722637 LSH