Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0468 ATGACTAGCACTTTTCCTTCTGCCCAAACTGAAGCTGATGTTGGTGTAACAAGATCCATAGGACAACAAGGAATGAACGATGTCTTGTCAGGAAACACTTCTCGTTTAATACCATCGAAGAGAAGATACTCAGATCTTGACGGTACTAGAGACTTCTTCGGAGGTGAAAGTTCTAGAATTGGTGCTCAAGCTGCTGGAAGAGCTCAACAAACCCTTGGTTCATCTCAACCCAACACCAACACCAACAACAATTTGATTGCATCTTCTAATCGCAATGAACTACCAAATAGTGACCACTTTCAGAGTGAAACTTCTCGTAATGTAAGACCATTCTCTAATATCCAAAATCCAGTTGGAGAAGTTCAAAGCATTGAAAGTAACTTCAATTTGCAAACAACTGCAACTGTTACTGTTACTGCTACTCCTCCTCTTGTTATACTTCCTGCAACTCGCAGATTGTCAAACATCCACCACACATGGGGGTTGCAACTTCCATTAACCAACACATCACGTCCCTTTTTCCAAAGTCGTCGTGCTCCTTTCATTAGCTCCTTATCAAGTACCCCAAATGGTTCAACTTCCTCAGTACAACCAGTTCTGTATGCCCCACATATTATCAGTTCCGTAAATGCTCATCCACTAGGTCGGTCTATTCATTATGAAACCATAAGTGGAGCTATACCACCCTTTATCAACCACAGAATCATTCTTGACAATGTGATGCACAACAACCCTCGAATTGGAACGGGAGACCACCAATATTATGATATCTTAAGTGGAGCTGTATCACAATTTCTCAACCAAAGAAATATTCATGAAAATGTGATGCGCATCAACCCTCGAATTGGAACGGGAAACCAAGATAATGGTCCAGGGATTATGGGTCTTGCCATTGGAACTCCTTATCAGTTTGGTTCTTATAATAATATTAGTCCACCAAATGCTCAAACAAGGGTCACTGGATCCACCCAACAAAGGTTTTGGAATCATCCTGGTACCCAAGGAAACTCACAAGAACTAGACCTTTCTCTTGCACTCGGTCATTCTGGAACTGTTAATGAGGGTAATTCAGTAGCAAGGTTTGAGACTCAAGCCTACAACAATTCTGTACCTTTTTTAACTAGAATGCTTAGGGTTCCTGAACCGAGAAGTAACCTACGATGGGTTAATACGGATGATCAGGTTAATATTGCCATCAGTATTTTGGAAGCTGCCTTACAACACCAACGTGTTGGTCACTTGCAATATGAGGATGTAATTCAATTTGCTAGAAATTTGGAGGAACTGATTGAAAGGCATGCTGTCACACAAGAGCAAAATGATGTGGCGAACATAGGATTAACTGAGGAAGATATTCTGAAGTACATTAAGCGTGAAAACTTTGAGTTTGTTGGCGAGGATACACCTGAAAATAGAGAAAAATGTTGCATTTGTCAGGCAACCTATACCAACGGGGAAGAAGTTGGGAAACTCGATTGTGTTCACAGGTTTCACGTGGATTGTATCAAACAATGGTTAGTCATAAAAAACATTTGCCCTGTGTGCAAACAAACAGCGTTAGCCATCGATGAAAATGATGAGTGA 1584 0.4091 MTSTFPSAQTEADVGVTRSIGQQGMNDVLSGNTSRLIPSKRRYSDLDGTRDFFGGESSRIGAQAAGRAQQTLGSSQPNTNTNNNLIASSNRNELPNSDHFQSETSRNVRPFSNIQNPVGEVQSIESNFNLQTTATVTVTATPPLVILPATRRLSNIHHTWGLQLPLTNTSRPFFQSRRAPFISSLSSTPNGSTSSVQPVLYAPHIISSVNAHPLGRSIHYETISGAIPPFINHRIILDNVMHNNPRIGTGDHQYYDILSGAVSQFLNQRNIHENVMRINPRIGTGNQDNGPGIMGLAIGTPYQFGSYNNISPPNAQTRVTGSTQQRFWNHPGTQGNSQELDLSLALGHSGTVNEGNSVARFETQAYNNSVPFLTRMLRVPEPRSNLRWVNTDDQVNIAISILEAALQHQRVGHLQYEDVIQFARNLEELIERHAVTQEQNDVANIGLTEEDILKYIKRENFEFVGEDTPENREKCCICQATYTNGEEVGKLDCVHRFHVDCIKQWLVIKNICPVCKQTALAIDENDE 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0468 527 MobiDBLite consensus disorder prediction 62 104 - -
Lal16g0468 527 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 53 520 IPR045191 GO:0061630
Lal16g0468 527 MobiDBLite consensus disorder prediction 63 104 - -
Lal16g0468 527 CDD RING-H2_TTC3 474 516 - -
Lal16g0468 527 SUPERFAMILY RING/U-box 474 520 - -
Lal16g0468 527 ProSiteProfiles Zinc finger RING-type profile. 475 516 IPR001841 -
Lal16g0468 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 451 524 IPR013083 -
Lal16g0468 527 Pfam Ring finger domain 474 516 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0468 Lal-Chr16 2902424 2905938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0468 427 520 C3H Transcription Factor Family AT2G15530 46.392 9.32e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0468 - K22753 lang:109350901 703.745