Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0467 ATGGCCTCTTCCGATCCATTCACCGACAAGAACACCTTCTTCCGTAAGCTTAAGTCAAAATCTGAAAATAAGATGTGTTTTGATTGCAATGCAAAGAACCCAACTTGGGCTTCTGTGACATATGGGATCTTCCTCTGCATCGATTGTTCTGCTGTTCATCGAAGTCTCGGCGTCCACATCAGCTTTGTCAGATCTACAAATTTAGACTCATGGAGTCCGGATCAACTAAAAACGATGAGCTTTGGAGGAAATAATCGTGCACAGGTTTTCTTTAAGCAGCATGGTTGGAATGATGGTGGTAAAATAGAGGCCAAATATACATCAAGAGCTGCAGAATTATATAAACAAATACTTTCTAAGGAAGTAGCTAAAAGTATGGCTGACGAAGCAGGTTTACAATCATCTGTTGCTTCTCAGTCTCTGCAAGTGACTAATGGACTTCCTGAAGTTAGGACAAACGAATTACCTAAAGAAAATAGTCTGGGGAAGCCTGAAATGCCTGAGAGCACTTCTTCACCAAGAGCTTCACATACAATAGTTTCCAGTACAGTAAAGAAATCTATTGTTGCTAAAAAATCTGGGAAGACTGGGGGGCTTGGAGCCAAGAAGCTTACTAAAAAGTGTCATTCGGCTGATCGTAATCTTACTGCCACTGAATTTGAGGTTATTTTTGTTGACAAATATTATCCTTATGACATGCAGCCAAGTGAGTCTCTCTATGAGCAGAAGCCAGAAGAACCACCTGCCCCGGTCTCTTCCTCGGCAAACAAAAATTTGCCTACTGGACCATCACAGCCATCTCGGTTTGGGTATGTAGAAAATGTCCAGTCATCTGATTTGAATTCTAGAGCTGGGGATACAGATGTGCATGGTCATGTGTCTTTACCGAAGTCATCGAGCTTCTTTGCAGACTTTGGAATGGATAGCGGTTTTCCAAAGAAGTCCATGTCGGATTCCTCAAAAGTGCAAATTCAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCTATTTCTTCATCCCAATTTTTTGGAGATCAGAACAAAGCTGAAGATTTGGCTGCTCAAGCTACTTTGTCAAAGTTTTCAGGTAAAACTTCCATCTCTAGTGCTGATCTTTTTGGTGACTCGGACTCCTCCATTGATCTTGCTGCTAGTGACCTCATCAATCGAATATCATTCCAGGCACAAGAAGATATCTCTTCCCTTAGAAACATTGCTGGAGAGACTGGGAAGAGGCTCAGCTCCTTGGCCAACATTTTGATAACAGATCTTCAAGATCGAATACTCTAA 1299 0.4149 MASSDPFTDKNTFFRKLKSKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPDQLKTMSFGGNNRAQVFFKQHGWNDGGKIEAKYTSRAAELYKQILSKEVAKSMADEAGLQSSVASQSLQVTNGLPEVRTNELPKENSLGKPEMPESTSSPRASHTIVSSTVKKSIVAKKSGKTGGLGAKKLTKKCHSADRNLTATEFEVIFVDKYYPYDMQPSESLYEQKPEEPPAPVSSSANKNLPTGPSQPSRFGYVENVQSSDLNSRAGDTDVHGHVSLPKSSSFFADFGMDSGFPKKSMSDSSKVQIQESDEARKKFSNAKSISSSQFFGDQNKAEDLAAQATLSKFSGKTSISSADLFGDSDSSIDLAASDLINRISFQAQEDISSLRNIAGETGKRLSSLANILITDLQDRIL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0467 432 MobiDBLite consensus disorder prediction 249 270 - -
Lal16g0467 432 SUPERFAMILY ArfGap/RecO-like zinc finger 12 126 IPR037278 -
Lal16g0467 432 MobiDBLite consensus disorder prediction 143 183 - -
Lal16g0467 432 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Lal16g0467 432 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Lal16g0467 432 PRINTS HIV Rev interacting protein signature 63 84 IPR001164 GO:0005096
Lal16g0467 432 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 234 432 - -
Lal16g0467 432 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 209 - -
Lal16g0467 432 SMART arf_gap_3 11 127 IPR001164 GO:0005096
Lal16g0467 432 MobiDBLite consensus disorder prediction 164 183 - -
Lal16g0467 432 CDD ArfGap_ArfGap2_3_like 9 124 - -
Lal16g0467 432 Gene3D Arf GTPase activating protein 2 141 IPR038508 -
Lal16g0467 432 MobiDBLite consensus disorder prediction 239 270 - -
Lal16g0467 432 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 234 432 - -
Lal16g0467 432 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 209 - -
Lal16g0467 432 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Lal16g0467 432 Pfam Putative GTPase activating protein for Arf 12 112 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0467 Lal-Chr16 2895253 2899745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0467 14 92 C2H2 Transcription Factor Family AT4G21160 45.000 3.76e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0467 K12493 K11855 gmx:100785169 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0467 16 2895253 2899745 Lal16g0467 16 2895253 2899745 ECH
Lal16g0467 16 2895253 2899745 Lal15g0411 15 2782786 2787418 LSH
Lal16g0467 16 2895253 2899745 Lal23g1117 23 12731789 12737488 LSH
Lal16g0467 16 2895253 2899745 Lal16g1746 16 16474320 16484497 PCT
Lal16g1746 16 16474320 16484497 Lal16g0467 16 2895253 2899745 PCT