Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0459 ATGGCTACTTTAGACTCTGCTCTCAGTCTCACCCTCTTTGCATCTCATCGTTTTTCCAACAACCACCGTTACTCTCCAAAACCACATGACTCCATAAAGTTCCATCCTTCTCTTCACAACAACCTCTTCTTCTCTTCCAAATCTTTGTCTTTCTCTACCTCCACATCACTCTGCTTCCAATTATGTTCTGCTTTGCAAGAAGCACCACCACCAACTTCAGAGGAAAAAACAGAGCAAAATCAAACCAAGACAACAAACTTGAAGACGAAGCTCTTCGTGTTCAACTTGCCTTGGACTCTGTCAGCGGTAGACATCAAGGAACTTTTTGCCCAATGCGGGAACGTAACCGACGTTGAGATAATTAAGAGCAAAGATGGGAGGAGCAAAGGGTTTTGCTTTGTTACTATGGCTACAGGGGAAGAGGCTATGGACGCTGTTAACAAATTTGACTCTTATAAATCGTTGAATGTCTCATTCAAATTAGAGGGTGAGCTCGATGCAACGATAAGGTTGCTGCCACGTGATGTGAAGATAATGAGTTCAAATCTTGGAAACGGACTCTCCACTTGTTGGGGAAGAGTGCGTTCTTCTACCCTCCCCAGATGGCCATATCCCACCTTAGTGGGAGCCTTGTCCACTGGCCTGCCGTTCTTTAATGTCTCATTGAAATTCTGTATGCTGACAATTTTGCTGACTAAAAATTGCCTGATTCAGGAAATATCAGGACGGATATTAAGAGTAGAGTTTTCAAAGAGATTTAAGAAACCTTCTCCTGCACGTCCTCCAGGCCCTCCTCTGGGCGAGACACGTCATGTTATTTTTGCAACCAACGTTGCATGGAAAGCAAGATCTACCCATTTCAGAGATTTCATCACTGAGAATTTCAAACAACCAGTTTCAGCCAGGGTTGTCTTTGACAGTCCTACTGGAAGATCAGCTGGGTATGCATTTGCTTCTTTTCTTACAAAGGAGGATGCAGAGGCTGCCATTTCTGCTTTGGATGGGAAGGAGTTAATGGGACGGCCACTTCACCTAAAATTTAGTGAAAGGAAGGTTAAAGAAGCTGGGAGTAAACAAGATGACAACAATACTCAACTTGAAGACAGTGCTGATGACGCTCAACTTGAAGAGGACACCGATGACGCCCAACCTGAAGACAACACTGATGACACTCAACTTGAAGACGACAATGATGATGCTCAACCCGAAGACGATCAACTTATAGAATCATAA 1233 0.438 MATLDSALSLTLFASHRFSNNHRYSPKPHDSIKFHPSLHNNLFFSSKSLSFSTSTSLCFQLCSALQEAPPPTSEEKTEQNQTKTTNLKTKLFVFNLPWTLSAVDIKELFAQCGNVTDVEIIKSKDGRSKGFCFVTMATGEEAMDAVNKFDSYKSLNVSFKLEGELDATIRLLPRDVKIMSSNLGNGLSTCWGRVRSSTLPRWPYPTLVGALSTGLPFFNVSLKFCMLTILLTKNCLIQEISGRILRVEFSKRFKKPSPARPPGPPLGETRHVIFATNVAWKARSTHFRDFITENFKQPVSARVVFDSPTGRSAGYAFASFLTKEDAEAAISALDGKELMGRPLHLKFSERKVKEAGSKQDDNNTQLEDSADDAQLEEDTDDAQPEDNTDDTQLEDDNDDAQPEDDQLIES 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0459 410 Gene3D - 52 159 IPR012677 -
Lal16g0459 410 Gene3D - 238 359 IPR012677 -
Lal16g0459 410 PANTHER OS02G0815200 PROTEIN 7 154 - -
Lal16g0459 410 PANTHER OS02G0815200 PROTEIN 238 367 - -
Lal16g0459 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 276 344 IPR000504 GO:0003723
Lal16g0459 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 153 IPR000504 GO:0003723
Lal16g0459 410 SUPERFAMILY RNA-binding domain, RBD 77 153 IPR035979 GO:0003676
Lal16g0459 410 SMART rrm1_1 272 346 IPR000504 GO:0003723
Lal16g0459 410 SMART rrm1_1 90 158 IPR000504 GO:0003723
Lal16g0459 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 350 IPR000504 GO:0003723
Lal16g0459 410 PANTHER CHLOROPLAST, PUTATIVE-RELATED 238 367 - -
Lal16g0459 410 PANTHER CHLOROPLAST, PUTATIVE-RELATED 7 154 - -
Lal16g0459 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 162 IPR000504 GO:0003723
Lal16g0459 410 MobiDBLite consensus disorder prediction 366 410 - -
Lal16g0459 410 SUPERFAMILY RNA-binding domain, RBD 241 355 IPR035979 GO:0003676
Lal16g0459 410 MobiDBLite consensus disorder prediction 352 410 - -
Lal16g0459 410 CDD RRM_SF 91 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0459 Lal-Chr16 2839957 2842787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0459 76 149 Eukaryotic Initiation Factors Gene Family AT2G36660 32.432 5.70e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0459 - - lang:109349094 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0459 16 2839957 2842787 Lal16g0459 16 2839957 2842787 ECH