Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0457 ATGAACACCAAAGATTGTAGTGAAGGGTTTTGTAGCTTATATTGTCCACAGTGGTGTAATGTAGTGTACCCTCCACCCCCTCCCTTTGAATTCCCTGATGATGATTCAGGTCCAAACTTCTCCCCTCTAGTCATTGCAATCATTGGAATCTTGGCCAGTGCTTTTCTTCTTGTGAGTTACTATACTATAATATCTAAGTACTGCGGACGCAGAGAATCTTCATCTTCACAAAGAGAAAACCATGAAGCAAATGTTGAAATTCAAGACAATCATAACCTTGCACTTCATGAGCCATGGCATGTTTCAACTACTGGCTTAGATGAGGCACTGATCAAGTCCATAACAGTATGCAAGTACAAACAAGGTGATTGTTTGGTTGGAGTAACAGATTGCTTAGTTTGTCTCAGTGAATTTCAAGATGGTGAAAGCATTAGACTCTTACCGAAGTGTAGCCATGCTTTTCATATTCCTTGCATTGACACATGGCTTAAATCTCACTCAACTTGTCCTCTATGCCGCGCTACCATATTTACCTTCAATGCTGCAGCATCATTCTATGTGCCACCACCAGTGATAGAACTTGCTTCAGGGAACGACACTACTTCGCAAAATCATCAACATGAAGATGAGATTGTAGTTGTTGGAAGAGGAAGTACTAGGTTGGATGTTGTGGAAGAAGAAATGACAATGCATGGTGATGGTAGAGAAGTTCCAAAGAATGCATTTCGCGCTTTTAGTGATTTGGGTAATTTGAGGGGAAGGCATAGTGTAATTGAGGTTGGAGATGAAGAAAATGAGTCCTTTAGGAGGTCAGTGTCTATGGATCATTCCTTACAAAATGAATTTTCAGTTGCTGATATTCTGAATATGAATGAAGAGCAAGATTCACAAGTAGAAGGGTCCCCTACTAATGAAGCTGGTCCATCGAAGATTTCAAGAGGTGAAAGTAGCAAGTCTAGTTATAGAAGAAGGGTCTTGCATTGTGTTTTGAGTCCAATTGAAATGAAGAGATCATTTTCCAGTGGAAGATTCTCACTTAGTAGACATGGCAGGGGAAGGCAAGGTATTTTACCTCTATGA 1080 0.4037 MNTKDCSEGFCSLYCPQWCNVVYPPPPPFEFPDDDSGPNFSPLVIAIIGILASAFLLVSYYTIISKYCGRRESSSSQRENHEANVEIQDNHNLALHEPWHVSTTGLDEALIKSITVCKYKQGDCLVGVTDCLVCLSEFQDGESIRLLPKCSHAFHIPCIDTWLKSHSTCPLCRATIFTFNAAASFYVPPPVIELASGNDTTSQNHQHEDEIVVVGRGSTRLDVVEEEMTMHGDGREVPKNAFRAFSDLGNLRGRHSVIEVGDEENESFRRSVSMDHSLQNEFSVADILNMNEEQDSQVEGSPTNEAGPSKISRGESSKSSYRRRVLHCVLSPIEMKRSFSSGRFSLSRHGRGRQGILPL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0457 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 180 IPR013083 -
Lal16g0457 359 MobiDBLite consensus disorder prediction 293 315 - -
Lal16g0457 359 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Lal16g0457 359 SUPERFAMILY RING/U-box 111 179 - -
Lal16g0457 359 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 350 IPR044675 -
Lal16g0457 359 MobiDBLite consensus disorder prediction 293 318 - -
Lal16g0457 359 SMART ring_2 131 172 IPR001841 -
Lal16g0457 359 Pfam Ring finger domain 130 173 IPR001841 -
Lal16g0457 359 CDD mRING-H2-C3H2C2D_ZSWM2 131 173 - -
Lal16g0457 359 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0457 Lal-Chr16 2835579 2836658 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0457 4 214 C3H Transcription Factor Family AT3G03550 49.339 2.32e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0457 - - gmx:100792267 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0457 16 2835579 2836658 Lal16g0457 16 2835579 2836658 ECH