Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0456 ATGGCTTTAGAAACTCTTCCATCTAATGAGTTTTCCAATTTCAGTATCTATGACACCATCTCTGCAACACCATTTAGCAGCTATGACTCTTCAGAGGCTAGTTTCTTATTAGGAGAGAACATAGTTGAATACCATGAACATGACCTTAATGCATTCAATAACTATACATTAGGGACACGAAAACGCCAATGCAGTGAACCTGAAGCAGTTAGCCGGAGGCATAATTTCGCTGCGCAAGGGAGGAAGAAGAGGAGAAGAAAGCCAAGAGTCTGCAAGAACAAGGAAGAAGCTGAAGCTCAAAGAATGTCTCACATTACAGTAGAAAGAAACCGGAGGAAGCAGATGAATGAGCATCTTGCTGTTTTGCGTTTACTCATGCCTGAATCCTATGTCCAAAGGGGTGACCAGGCCTCTATAGTTGGTGGTGCTATAGAATTTGTGAAGGAGCTAGAGCATCTCTTGCAGTCTCTTGAGGCTCAAAAGTTGCAAATTTTACATCAAAGGGTTGCACAAGCTAATGAAGATAAAGCCATTTCCAAAATCAATACACCCCCTTTTGCACACTTTTTTGTGTACCCTCAGTATACATGGTCCCATGCCCCTAACAAATACACATCTCAGACTAAGGTTGCCATAGCTGATATTGAGGTTACTTTGATCGAAACACATGCAAGCATTCGAATTCTATCGCAAAGAAGACTCAAGCAGCTATCAAAGTTGGTTGCTGGTTTTCAAATACTCTACCTGACCATCCTTCATCTCAATGTCACAACCATGGACCCATTGGTACTTTATTCTGTCAGTGCTAAGGTTGAAGAAGGATGTCAAGTTGGTTCAGTAGATGAGATTGCAACAGAAGTTCACGACTTGCTTAGAATGATTGATGAAGAGGCTTCCCTTTGTTGTTGTTGA 912 0.4156 MALETLPSNEFSNFSIYDTISATPFSSYDSSEASFLLGENIVEYHEHDLNAFNNYTLGTRKRQCSEPEAVSRRHNFAAQGRKKRRRKPRVCKNKEEAEAQRMSHITVERNRRKQMNEHLAVLRLLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEAQKLQILHQRVAQANEDKAISKINTPPFAHFFVYPQYTWSHAPNKYTSQTKVAIADIEVTLIETHASIRILSQRRLKQLSKLVAGFQILYLTILHLNVTTMDPLVLYSVSAKVEEGCQVGSVDEIATEVHDLLRMIDEEASLCCC 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0456 303 CDD bHLH_AtFAMA_like 102 161 - -
Lal16g0456 303 Gene3D - 91 168 IPR036638 GO:0046983
Lal16g0456 303 PANTHER TRANSCRIPTION FACTOR BHLH71 1 301 - -
Lal16g0456 303 PANTHER MAX DIMERIZATION, MAD 1 301 - -
Lal16g0456 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 150 IPR011598 GO:0046983
Lal16g0456 303 SMART finulus 105 156 IPR011598 GO:0046983
Lal16g0456 303 Pfam Helix-loop-helix DNA-binding domain 100 151 IPR011598 GO:0046983
Lal16g0456 303 MobiDBLite consensus disorder prediction 67 98 - -
Lal16g0456 303 Coils Coil 147 167 - -
Lal16g0456 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 167 IPR036638 GO:0046983
Lal16g0456 303 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0456 Lal-Chr16 2828510 2830948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0456 44 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 50.218 1.07e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal16g0456 HLH 2.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0456 - - pvu:PHAVU_003G284500g 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0456 16 2828510 2830948 Lal16g0456 16 2828510 2830948 ECH