Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0455 ATGTCTTCAGCAAAACCAGATGATTCTGAATCCCCACCATATTCATCATATAGCAGCCCACCAACTCTTATAGCTTTTACCCTGACCTTGGTTGTGGTGTGTTTTGTTGGTTTCAGCACTGTTTACTTCTGCAGGTGTTATTTAATGAGCAATTTCATCACTTGGATATTTCAACGTTCAACCTCACTTGGTGGTTCCATTGTTAATAATCTTACTTCTCTCAATAGGAGGCTTGATCCTTTGGTGCTTCAAACTTTCCCTACATTTCCCTATTCCACTGTTAAAGACATTCGAAAAGAGAAGTATAGCCTCGAATGCGCAATTTGCTTGTTTGAATTCGAGGATGATAGCATGCTGCGCTTGTTAACCATATGTTTCCATGTTTTTCATCAAGAATGCATTGACCTATGGCTTAGTTCTAACAAGACATGCCCTGTTTGTCGCAAAGATCTTGATTCAACAATCGAGGAATCACGAAATTCTCACAAGCGAGGCGAGGACAATGTTAATGTTGAACAAGAAAGAAGGGATGAGGTATCCATTGATGTAAAAGAAAGCGAAAATCACCATAGACATAGTGGTGGTGATAATGAAGAGTCAATTCCTATGAGTGTTCCTTTGGGAAACTATCTTATGTGGAAGCTTTCCTATGCATTTAGAAGTGGCAAGTGGGTTAGGATGTGGCTCTGGGTTCTCTCTATGTATTGGCAAAGCTTAACTTAG 723 0.3983 MSSAKPDDSESPPYSSYSSPPTLIAFTLTLVVVCFVGFSTVYFCRCYLMSNFITWIFQRSTSLGGSIVNNLTSLNRRLDPLVLQTFPTFPYSTVKDIRKEKYSLECAICLFEFEDDSMLRLLTICFHVFHQECIDLWLSSNKTCPVCRKDLDSTIEESRNSHKRGEDNVNVEQERRDEVSIDVKESENHHRHSGGDNEESIPMSVPLGNYLMWKLSYAFRSGKWVRMWLWVLSMYWQSLT 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0455 240 Pfam Ring finger domain 105 148 IPR001841 -
Lal16g0455 240 PANTHER RING FINGER DOMAIN-CONTAINING 7 194 - -
Lal16g0455 240 MobiDBLite consensus disorder prediction 157 197 - -
Lal16g0455 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 158 IPR013083 -
Lal16g0455 240 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Lal16g0455 240 SUPERFAMILY RING/U-box 100 154 - -
Lal16g0455 240 MobiDBLite consensus disorder prediction 157 200 - -
Lal16g0455 240 SMART ring_2 106 147 IPR001841 -
Lal16g0455 240 CDD RING-H2_PA-TM-RING 105 148 - -
Lal16g0455 240 PANTHER RING-H2 FINGER PROTEIN ATL29 7 194 - -
Lal16g0455 240 SMART ringv_2 105 148 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0455 Lal-Chr16 2825675 2826680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0455 2 173 Rapid Response to Elicitors AT3G05200 36.994 9.46e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0455 - - gmx:100815505 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0455 16 2825675 2826680 Lal15g0404 15 2740079 2740966 LSH