Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0454 ATGGATCAAACCCGAGACAGCAACGTGGTTCAAATAATCACCGGCGATGAAAACTGGTCCTCCTCCGGCGACCAATCCGTTTGGGCAACCGAAGACGATTACAGATTCTTCAACAATAGCAACGATGCCGAATCAACTCCTAAGAGATCGAGAAACTCGCAGGACGCAACGGCGTCGTCTAGTAATAACCGTTCAAAAGCGATTGGGAAAATGTTCTTCAAAACTAAGCTTTGTTGCAAGTTCCGTTCCGGCACGTGTCCGTATGTGACGAACTGCAACTTCGCGCATAGCATAGAGGAGCTGCGGCGGCCACCGATGAACTGGCAGGAGATCGTGGCGGCGCACGAGGATGAGAAATCGGTGCCGACGAGGGAGGAGTTTCAGATTCCGTCGCTTTCGGGGTATTCAGGGGAGACACAGAGGTCTTATAAGGGGAGACATTGTAAGAAGTTTTATACTGAGGAAGGGTGTCCCTATGGGGATAGTTGCACTTTTATGCATGATGAGAGTTCGAGGAATAGAGAGAGTGTGGCTATTAGTTTGGGACCTGGTGGGTATGGTGGTGGCAGTGGCAGTGGCGGCGGTGGTACAGGTGGGGGTGCTGGGAGTGGTGGCGGTGGTGCTAGTTCCAATTTGAAGCCATCGAATTGGAAGACGAGAATATGCAATAAGTGGGAGTTAACTGGGTATTGCCCGTTTGGGAATAAATGTCATTTTGCTCATGGTGCTGCAGAATTGAACCAACATAGTGGGCTTGTAGAGGGAGAAAATAGAGACTCGGCTTCTGCTGGTACTCCTGACACAAAACGTGGAGGAATACTGTCGAAAATTCCTGCAGATAATGTGGTTGCATCAGTTATTCCAGTTGCTCATTCTGATGTCTATCATATTGGGGTTCCTTCACAAAGGCCTTCGGTTGTGATTCAGAGGCCAGGACAGAGAGCTCATCAGAAGTGGAAAGGTCCAGATAAAATAAGCAGGATATATGGTGATTGGATCGATGACATCGAATAG 1014 0.4882 MDQTRDSNVVQIITGDENWSSSGDQSVWATEDDYRFFNNSNDAESTPKRSRNSQDATASSSNNRSKAIGKMFFKTKLCCKFRSGTCPYVTNCNFAHSIEELRRPPMNWQEIVAAHEDEKSVPTREEFQIPSLSGYSGETQRSYKGRHCKKFYTEEGCPYGDSCTFMHDESSRNRESVAISLGPGGYGGGSGSGGGGTGGGAGSGGGGASSNLKPSNWKTRICNKWELTGYCPFGNKCHFAHGAAELNQHSGLVEGENRDSASAGTPDTKRGGILSKIPADNVVASVIPVAHSDVYHIGVPSQRPSVVIQRPGQRAHQKWKGPDKISRIYGDWIDDIE 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0454 337 SUPERFAMILY CCCH zinc finger 141 170 IPR036855 GO:0046872
Lal16g0454 337 MobiDBLite consensus disorder prediction 1 25 - -
Lal16g0454 337 ProSiteProfiles Zinc finger C3H1-type profile. 72 99 IPR000571 GO:0046872
Lal16g0454 337 ProSiteProfiles Zinc finger C3H1-type profile. 142 170 IPR000571 GO:0046872
Lal16g0454 337 MobiDBLite consensus disorder prediction 178 213 - -
Lal16g0454 337 Gene3D - 67 103 - -
Lal16g0454 337 Gene3D - 209 249 - -
Lal16g0454 337 Gene3D - 136 174 - -
Lal16g0454 337 ProSiteProfiles Zinc finger C3H1-type profile. 216 244 IPR000571 GO:0046872
Lal16g0454 337 SUPERFAMILY CCCH zinc finger 70 103 IPR036855 GO:0046872
Lal16g0454 337 Pfam CCCH-type zinc finger 146 168 IPR041367 -
Lal16g0454 337 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 73 97 IPR000571 GO:0046872
Lal16g0454 337 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 217 242 IPR000571 GO:0046872
Lal16g0454 337 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 14 334 - -
Lal16g0454 337 SMART c3hfinal6 142 169 IPR000571 GO:0046872
Lal16g0454 337 SMART c3hfinal6 72 98 IPR000571 GO:0046872
Lal16g0454 337 SMART c3hfinal6 216 243 IPR000571 GO:0046872
Lal16g0454 337 MobiDBLite consensus disorder prediction 38 62 - -
Lal16g0454 337 SUPERFAMILY CCCH zinc finger 213 248 IPR036855 GO:0046872
Lal16g0454 337 PANTHER CCCH ZINC FINGER/TIS11-RELATED 14 334 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0454 Lal-Chr16 2821694 2824826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0454 218 246 C3H Transcription Factor Family AT1G68200 62.069 2.76e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal16g0454 zf-CCCH 1.1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0454 - - lang:109349089 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0454 16 2821694 2824826 Lal16g0454 16 2821694 2824826 ECH