Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal16g0454 | ATGGATCAAACCCGAGACAGCAACGTGGTTCAAATAATCACCGGCGATGAAAACTGGTCCTCCTCCGGCGACCAATCCGTTTGGGCAACCGAAGACGATTACAGATTCTTCAACAATAGCAACGATGCCGAATCAACTCCTAAGAGATCGAGAAACTCGCAGGACGCAACGGCGTCGTCTAGTAATAACCGTTCAAAAGCGATTGGGAAAATGTTCTTCAAAACTAAGCTTTGTTGCAAGTTCCGTTCCGGCACGTGTCCGTATGTGACGAACTGCAACTTCGCGCATAGCATAGAGGAGCTGCGGCGGCCACCGATGAACTGGCAGGAGATCGTGGCGGCGCACGAGGATGAGAAATCGGTGCCGACGAGGGAGGAGTTTCAGATTCCGTCGCTTTCGGGGTATTCAGGGGAGACACAGAGGTCTTATAAGGGGAGACATTGTAAGAAGTTTTATACTGAGGAAGGGTGTCCCTATGGGGATAGTTGCACTTTTATGCATGATGAGAGTTCGAGGAATAGAGAGAGTGTGGCTATTAGTTTGGGACCTGGTGGGTATGGTGGTGGCAGTGGCAGTGGCGGCGGTGGTACAGGTGGGGGTGCTGGGAGTGGTGGCGGTGGTGCTAGTTCCAATTTGAAGCCATCGAATTGGAAGACGAGAATATGCAATAAGTGGGAGTTAACTGGGTATTGCCCGTTTGGGAATAAATGTCATTTTGCTCATGGTGCTGCAGAATTGAACCAACATAGTGGGCTTGTAGAGGGAGAAAATAGAGACTCGGCTTCTGCTGGTACTCCTGACACAAAACGTGGAGGAATACTGTCGAAAATTCCTGCAGATAATGTGGTTGCATCAGTTATTCCAGTTGCTCATTCTGATGTCTATCATATTGGGGTTCCTTCACAAAGGCCTTCGGTTGTGATTCAGAGGCCAGGACAGAGAGCTCATCAGAAGTGGAAAGGTCCAGATAAAATAAGCAGGATATATGGTGATTGGATCGATGACATCGAATAG | 1014 | 0.4882 | MDQTRDSNVVQIITGDENWSSSGDQSVWATEDDYRFFNNSNDAESTPKRSRNSQDATASSSNNRSKAIGKMFFKTKLCCKFRSGTCPYVTNCNFAHSIEELRRPPMNWQEIVAAHEDEKSVPTREEFQIPSLSGYSGETQRSYKGRHCKKFYTEEGCPYGDSCTFMHDESSRNRESVAISLGPGGYGGGSGSGGGGTGGGAGSGGGGASSNLKPSNWKTRICNKWELTGYCPFGNKCHFAHGAAELNQHSGLVEGENRDSASAGTPDTKRGGILSKIPADNVVASVIPVAHSDVYHIGVPSQRPSVVIQRPGQRAHQKWKGPDKISRIYGDWIDDIE | 337 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal16g0454 | 337 | SUPERFAMILY | CCCH zinc finger | 141 | 170 | IPR036855 | GO:0046872 | |
Lal16g0454 | 337 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Lal16g0454 | 337 | ProSiteProfiles | Zinc finger C3H1-type profile. | 72 | 99 | IPR000571 | GO:0046872 | |
Lal16g0454 | 337 | ProSiteProfiles | Zinc finger C3H1-type profile. | 142 | 170 | IPR000571 | GO:0046872 | |
Lal16g0454 | 337 | MobiDBLite | consensus disorder prediction | 178 | 213 | - | - | |
Lal16g0454 | 337 | Gene3D | - | 67 | 103 | - | - | |
Lal16g0454 | 337 | Gene3D | - | 209 | 249 | - | - | |
Lal16g0454 | 337 | Gene3D | - | 136 | 174 | - | - | |
Lal16g0454 | 337 | ProSiteProfiles | Zinc finger C3H1-type profile. | 216 | 244 | IPR000571 | GO:0046872 | |
Lal16g0454 | 337 | SUPERFAMILY | CCCH zinc finger | 70 | 103 | IPR036855 | GO:0046872 | |
Lal16g0454 | 337 | Pfam | CCCH-type zinc finger | 146 | 168 | IPR041367 | - | |
Lal16g0454 | 337 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 73 | 97 | IPR000571 | GO:0046872 | |
Lal16g0454 | 337 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 217 | 242 | IPR000571 | GO:0046872 | |
Lal16g0454 | 337 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE | 14 | 334 | - | - | |
Lal16g0454 | 337 | SMART | c3hfinal6 | 142 | 169 | IPR000571 | GO:0046872 | |
Lal16g0454 | 337 | SMART | c3hfinal6 | 72 | 98 | IPR000571 | GO:0046872 | |
Lal16g0454 | 337 | SMART | c3hfinal6 | 216 | 243 | IPR000571 | GO:0046872 | |
Lal16g0454 | 337 | MobiDBLite | consensus disorder prediction | 38 | 62 | - | - | |
Lal16g0454 | 337 | SUPERFAMILY | CCCH zinc finger | 213 | 248 | IPR036855 | GO:0046872 | |
Lal16g0454 | 337 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 14 | 334 | IPR045877 | GO:0003729 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal16g0454 | Lal-Chr16 | 2821694 | 2824826 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal16g0454 | 218 | 246 | C3H Transcription Factor Family | AT1G68200 | 62.069 | 2.76e-07 | 49.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Lal16g0454 | zf-CCCH | 1.1e-10 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal16g0454 | - | - | lang:109349089 | 626.32 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal16g0454 | 16 | 2821694 | 2824826 | Lal16g0454 | 16 | 2821694 | 2824826 | ECH |