Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0447 ATGTCAAACAGGGGTGCATTCTCTGGTGACTTGGCCGGGAATAATGTTAAGGAAGGGGAGAGAAAAAAGGAACATAAGGTTCCTTTGTTAAAGCTGTTCTCTTTTGCTGATTTTTATGATTGTGTCTTAATGGCTATTGGATCTCTTGGGGCATGTGTTCATGGTGCTTCTGTTCCTGTTTTCTTCATCTTCTTTGGAAAGTTGATCAATGTCATAGGTCTGGCTTACCTTTTTCCTAAGGAAGCTTCACCCCAAGTTGCCAAGTACTCCTTGGATTTTGTGTATCTAAGTATAGCAATATTGTTTTCATCATGGACAGAGGTGGCTTGTTGGATGCATACTGGGGAAAGACAAGCAGCAAAGATGAGAATGGCTTATCTAAGGGCAATGTTGAATCAAGATATAAGCTTATTTGATACAGAGGCATCAACAGGAGAGGTCATTTCTGCAATTACAAGTGACATTATTATTGTTCAAGATGCACTTTCTGAGAAGGTAGGAAACTTCATGCACTACATAAGCCGATTCGTAGCAGGCTTTACTATTGGCTTTGTGAGAGTGTGGCAAATAAGTTTAGTGACACTTTCAATTGTTCCCTTGATTGCACTAGCTGGAGGTCTTTATGCATACGTCACAATTGGCCTTATTGCACAAATTAGAAAGGCTTACGTTAGGGCTGGTGAAATTGCTGAAGAGGTGATAGGCAATATTAGAACGGTGCAAGCATTTACAGGAGAAGAAAAAGCTGTAAGATCATATAAGACTGCTCTCATGAAAACTTACAAAAATGGTAGAAAAGCAGGTTTAGCAAAGGGTTTGGGAATAGGCTCAATGCATTGTGTTCTTTTTCTATCGTGGGCATTGCTTACTTGGTTCACTAGCATTGTTGTTCACAAGCATATTGCCAATGGGGGCGATTCTTTCACTACCATGCTCAATGTTGTCATTTCTGGCCTATCACTTGGACAGGCAGCACCAGATATCTCTGCGTTTATCCGAGCAAAAGCAGCGGCTTATCCGATATTTGAGATGATAGAGAGAGACACAGTGAGCAAAAGAAGCTCAAAAACTGGTCGGAAATTAAGCAAGCTGGAGGGTCATATCCAATTCAAGGATGTTTGTTTCAGTTACCCTTCTCGTCCTGATGTACTTATCTTCAATGACCTCTGTCTTAACATTCCTTCAGGGAAAATAGTAGCCCTTGTGGGAGGAAGTGGATCCGGAAAGAGCACTATTATATCATTGATTGAACGCTTCTATGAACCTGTTTCTGGTCAGGTGCTATTAGATAGGAACAATATTAGGGAACTTGATCTCAATTGGATGAGGCATCAAATTGGACTAGTTAACCAAGAACCTGCCCTTTTTGCTACAAGCATCAAGGAGAACATACTGTATGGAAAAGATGACGCCACACTTGAAGAACTAAAACGTGCCGTGAAGCTTTCAGATGCTCAATCTTTTATTAACAATCTTCCTGATAGATTAGAAACTCAGGTTGGTGAGAGAGGGATACAACTATCAGGTGGACAAAAACAAAGGATTGCAATATCTCGCGCTATAGTGAAGAATCCATCAATTCTTTTATTGGATGAAGCAACCAGTGCTCTGGATGCTGAGTCAGAGAAAAGTGTACAGGAGGCCCTTGATCGTGTCATGATTGGTAGGACAACTGTGGTAGTAGCACATAGACTTTCTACCATAAGGAATGCAGATATAATCGCGGTTGTTCAGGGTGGAAGGATTGTGGAAACTGGCAACCACGAAGAACTCATTTCCAACCCAACTAGTGTATATGCATCTCTTATTCAACTCCAGGAGGCAACTTCTGTGCAAAGCCACCCTTCAGGTGGTCCTAGCTTGGGACGGCAATCAAGCACAAAGTATTCAAGAGAATTATCCCGTACAACAAGCGTTGGTGCTAGTTTTCGATCAGATAAAGAATCTGTTGGCCGAGCTTGTACAGATGAGGCAGAAAATTCAAGCAGGTCGAGGCATATTTCAGCAGGAAGGCTATATTCTATGGTGGGTCCTGACTGGTATTATGGGGTTATTGGGACATTATGTGCATTTGTTGCTGGGGCACAGATGCCTCTTTTTGCCCTTGGTATCTCTCACGCTCTTGTATCATACTACATGGATTGGGATACAACGCGCCATGAAGTCAAAAAAATTGCTTTCCTCTTCTGTGGAGGAGCAGTTATAACTATCACTGTCCATGCCATTGAACATCTTTCTTTTGGAATCATGGGGGAGCGACTTACCCTTCGTGTGAGAGAAAATATGTTTTCAGCTATTTTGAAGAACGAAATTGGCTGGTTTGATGATACAAACAACACAAGTTCTATGCTTTCATCGCGTTTAGAGACTGATGCAACATTATTACGAACTATAGTTGTTGATCGTTCTACAATTCTCTTACAGAATATTGGCCTGGTTGTTGCTTCCTTTATTATTGCCTTCATCCTGAACTGGAGAATAACGCTTGTTGTCATAGCCACATATCCTTTGGTCATCAGTGGTCACATCAGTGAGAAACTTTTCATGAAAGGTTATGGTGGCAACTTGAGCAAAGCATATCTGAAAGCCAACATGCTGGCCGGGGAGGCTGTGAGCAATATGCGCACTGTTGCTGCATTTTGTTCTGAGGAAAAGGTCCTTGACCTTTATGCTAATGAGCTTGTTGATCCTTCCAAACGGTCATTTCAGCGCGGCCAAATTGCTGGCCTATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTAGCCTTGTGGTATGGATCTGTTTTGATGGAAAAGGAGCTTGCTAGCTTTAAATCGGTTATGAAGTCGTTTATGGTTTTAATTGTGACAGCATTGGCTATGGGGGAGACTTTGGCACTGGCACCAGACCTTTTGAAAGGGAATCAAATGGTTGCTTCTGTTTTTGAAGTGATGGACAGAAAGTCAGAAATAACAGGTGATGATGGAGAGGAATTGAAGACAGTGGAAGGAACAATTGAGCTCAAAAGAATCCAATTCAGCTACCCTTCAAGACCAGATGTAATTATTTTCAAGGATTTCAGTCTAGGAGTTCCTTCAGGAAAGAGTATTGCCTTAGTGGGGCAAAGTGGTTCTGGTAAAAGCTCTGTGATCTCCCTTATACTGAGGTTTTACGATCCAAATTCTGGGAGGGTGTTAATTGATGGAAAGGACATCAAGAGACTTAATCTGAAATCTGTTAGGAAACACATTGGTCTTGTGCAACAAGAACCGGCTCTTTTTGCAACATCAATCTATGAAAACATTCTTTATGGAAAAGAAGGAGCCTCTGACTCAGAAGTAATTGAAGCAGCAAAACTTGCCAATGCTCACACCTTCATAAGTGGTCTTCCAGAGGGTTACTCAACCAAAGTTGGTGAGAGAGGAGTGCAACTATCAGGTGGACAAAGACAAAGGGTAGCCATTGCTAGAGCTGTTCTAAAGAACCCAGAAATATTGCTCTTAGATGAAGCCACTAGTGCACTAGATGTGGAATCAGAACGTGTGGTACAACAGGCTCTGGATAGATTAATGCAGAATAGAACTACAGTTATGGTGGCACATAGATTATCCACTATAAGAAATGCTGACCAAATCTCAGTTTTACAGGATGGAAAGATAATTGAGCAAGGGACTCATTCAAGTCTTATAGAGAATAAAAATGGAGCATACTTTAAACTAGTCAACCTTCAACAACAGCAACAGCATCAAGTATAG 3747 0.4145 MSNRGAFSGDLAGNNVKEGERKKEHKVPLLKLFSFADFYDCVLMAIGSLGACVHGASVPVFFIFFGKLINVIGLAYLFPKEASPQVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAYLRAMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFMHYISRFVAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAQIRKAYVRAGEIAEEVIGNIRTVQAFTGEEKAVRSYKTALMKTYKNGRKAGLAKGLGIGSMHCVLFLSWALLTWFTSIVVHKHIANGGDSFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKRSSKTGRKLSKLEGHIQFKDVCFSYPSRPDVLIFNDLCLNIPSGKIVALVGGSGSGKSTIISLIERFYEPVSGQVLLDRNNIRELDLNWMRHQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMIGRTTVVVAHRLSTIRNADIIAVVQGGRIVETGNHEELISNPTSVYASLIQLQEATSVQSHPSGGPSLGRQSSTKYSRELSRTTSVGASFRSDKESVGRACTDEAENSSRSRHISAGRLYSMVGPDWYYGVIGTLCAFVAGAQMPLFALGISHALVSYYMDWDTTRHEVKKIAFLFCGGAVITITVHAIEHLSFGIMGERLTLRVRENMFSAILKNEIGWFDDTNNTSSMLSSRLETDATLLRTIVVDRSTILLQNIGLVVASFIIAFILNWRITLVVIATYPLVISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNMRTVAAFCSEEKVLDLYANELVDPSKRSFQRGQIAGLFYGISQFFIFSSYGLALWYGSVLMEKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSEITGDDGEELKTVEGTIELKRIQFSYPSRPDVIIFKDFSLGVPSGKSIALVGQSGSGKSSVISLILRFYDPNSGRVLIDGKDIKRLNLKSVRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHTFISGLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIENKNGAYFKLVNLQQQQQHQV 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0447 1248 Gene3D - 358 607 IPR027417 -
Lal16g0447 1248 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 20 1244 IPR039421 -
Lal16g0447 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 606 IPR027417 -
Lal16g0447 1248 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 20 1244 - -
Lal16g0447 1248 SMART AAA_5 1030 1216 IPR003593 -
Lal16g0447 1248 SMART AAA_5 395 581 IPR003593 -
Lal16g0447 1248 Pfam ABC transporter 387 535 IPR003439 GO:0005524
Lal16g0447 1248 Pfam ABC transporter 1022 1170 IPR003439 GO:0005524
Lal16g0447 1248 Gene3D - 993 1248 IPR027417 -
Lal16g0447 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 368 604 IPR003439 GO:0005524
Lal16g0447 1248 CDD ABC_6TM_Pgp_ABCB1_D2_like 673 988 - -
Lal16g0447 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 45 333 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal16g0447 1248 Pfam ABC transporter transmembrane region 685 956 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal16g0447 1248 Pfam ABC transporter transmembrane region 46 316 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal16g0447 1248 MobiDBLite consensus disorder prediction 610 644 - -
Lal16g0447 1248 CDD ABC_6TM_Pgp_ABCB1_D1_like 44 341 - -
Lal16g0447 1248 ProSitePatterns ABC transporters family signature. 1142 1156 IPR017871 GO:0005524
Lal16g0447 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 684 970 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal16g0447 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 994 1241 IPR027417 -
Lal16g0447 1248 SUPERFAMILY ABC transporter transmembrane region 32 338 IPR036640 GO:0005524|GO:0016021
Lal16g0447 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1003 1239 IPR003439 GO:0005524
Lal16g0447 1248 CDD ABC_MTABC3_MDL1_MDL2 1003 1240 - -
Lal16g0447 1248 ProSitePatterns ABC transporters family signature. 507 521 IPR017871 GO:0005524
Lal16g0447 1248 CDD ABC_MTABC3_MDL1_MDL2 368 606 - -
Lal16g0447 1248 Gene3D ABC transporter type 1, transmembrane domain 31 972 IPR036640 GO:0005524|GO:0016021
Lal16g0447 1248 SUPERFAMILY ABC transporter transmembrane region 671 987 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0447 Lal-Chr16 2762844 2772314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0447 16 1248 Calmodulin-binding Proteins AT2G36910 50.119 0.0 1221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0447 K05658 - gmx:100819045 2182.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0447 16 2762844 2772314 Lal16g0447 16 2762844 2772314 ECH