Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0446 ATGAGCATGAGAGGCAGTGGGAGAGAGCATCGTTCTCATGTTCATCATCATCATAATAATAATCATAATCATGATGATAACACATCATCATCATCATCATCTTCTACTTTTCCTTCTCAGCGTAGTAGAGGTGGTGGAAGGAAACAAGGCCATCATCATCATGGCCATGCTCCACAACCCAAATTACGCTTTGTCAAGAAGTCCGAAATCATTCAATCTTCTTCCATTTCTAACTCTGATAACTCTTTTCTCACCGAACAACTTGACTCCGTAACCATCTCCAACCACAACAATAATGATGCGTGTTCGAGCAAGGCCAAGGAGGAAGGGGATTTTAATGATATGGATGATAATACATTTTCACTGAGTAGTAGACTTGATAAGTTACTCTCTCGGATGGAACAACCTCAATTGTCCGAGGAACACCTTAGAGACAATGACATATCCCAGCAAAATGAGACCTGTAGAACCAAGAGAGTGGAGAAAATGGAAGGTAGTCTAATCGCTAGAGACCGAGGGAGACCAACAAATCCTATAAATGAAATCGTTCAGAAAGATTCAGATGTCAACAATGTTTCCCTTGTACAGTTACTTGTGGTGGAATCGATTTATGGAGAAAACGTTTTCATCCTTGACGCATGGAAAGACCTCCACTGTTTTCAGATACACATAAATATTGAAGTTTTGGGTGAGATTGCTATTACTGCTAAGATGAACTCTTCTAATGAACTTGAGTCTGTAAGCAAGAATTCAGATGACTTCTTATACTCTTTCAAAGTCCAATATCTTCCACCGATTGTTCTGACCTGTTTATTACCAAAGTCGTACCCTAGCCACCAGCCTCCTATATTTACAATCTCTGTTCAGTGGTTGGAGTCTTCAAATATTTCTAGTCTATGCTCCAAGTTGGATTCCATTTGGGAAGAACAGGAAGGCCAAGAAGTAATTTACCAGTGGGTCGAATGGTTACTTAATTCTTCTCTTTCTCACCTGGGATTTGATAAGGAAATTAAACTAGGTCCTTATGGCATGAATCATGTCGGAGATGACCGAGTTGTTTCAGGAACTTCATCCCCTGATGTTGACATTCCTTTGTTACAAAATTATAACAATCAGAAACACCATGAGAGCTTCCTCAAAGAATTGCATCAATGCCAGATTTGCTTTAGTGAATATGCAGGTACAGAGTTTCGCCAGTTACCATGTAAGCATTTTTTTTGCTTGAAGTGCTTGCAGACCTTTACTCAGATGCATGTAAAAGAAGGTACAATTAGTAGTCTTCAGTGTCCTGAGGCAAAATGTACAGTTATGATTCCACCTGGCCTTTTAAAACACTTGCTTGATGATAATGAGTATGAACGCTGGGAATCCATGATGTTGGAGAAAACACTTGCATCAATGTCTGATGTTGTTTATTGTCCAAGCGAACGGCGTCATGTTGGCATTGTATGCATGACGCTAGATATGAGGCTTCAGATTCTGCAGGACCGTCAAAATTCATCTCACTTAAAGGAAGATCAAAAGCGTAGGGAACGCGAAAAGATAAATGAAATGCTCAGTGTGAAAGAAATACATCGTGATTCCAAGCTGTGCCCTTCCTGTGACATGGCAATTTCTCGAACTGAAGGTTGTAACAAAATGGTATGCGGCAATTGTGGAGAATATTTCTGTTACCGCTGCAACAAAGCAATTGATAAATCAGATCCATATGGACATTTCAGGGATGGAGCATGCGAATTGTTCCCACAAGAAATGATTGAGAACTGGCAAGAGCGTATAAACCATCGGCAGGTGGTTGGACAATTACAGGCTGAACTCTTTCCTCAAAGTGGTCGGGCATGTCCTAATTGTCGTCAATTTAATGCGAAGATTGGAAACAATAATCACATGTTTTGCTGGGCATGCCAAAGTCATTACTGCTATTTATGCAACGAGGTTGTCAGGCGTGGCACTAAGCATTATGGACCAAAGGGCTGCAAACAACATTCTGAGGGATAG 1998 0.4059 MSMRGSGREHRSHVHHHHNNNHNHDDNTSSSSSSSTFPSQRSRGGGRKQGHHHHGHAPQPKLRFVKKSEIIQSSSISNSDNSFLTEQLDSVTISNHNNNDACSSKAKEEGDFNDMDDNTFSLSSRLDKLLSRMEQPQLSEEHLRDNDISQQNETCRTKRVEKMEGSLIARDRGRPTNPINEIVQKDSDVNNVSLVQLLVVESIYGENVFILDAWKDLHCFQIHINIEVLGEIAITAKMNSSNELESVSKNSDDFLYSFKVQYLPPIVLTCLLPKSYPSHQPPIFTISVQWLESSNISSLCSKLDSIWEEQEGQEVIYQWVEWLLNSSLSHLGFDKEIKLGPYGMNHVGDDRVVSGTSSPDVDIPLLQNYNNQKHHESFLKELHQCQICFSEYAGTEFRQLPCKHFFCLKCLQTFTQMHVKEGTISSLQCPEAKCTVMIPPGLLKHLLDDNEYERWESMMLEKTLASMSDVVYCPSERRHVGIVCMTLDMRLQILQDRQNSSHLKEDQKRREREKINEMLSVKEIHRDSKLCPSCDMAISRTEGCNKMVCGNCGEYFCYRCNKAIDKSDPYGHFRDGACELFPQEMIENWQERINHRQVVGQLQAELFPQSGRACPNCRQFNAKIGNNNHMFCWACQSHYCYLCNEVVRRGTKHYGPKGCKQHSEG 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0446 665 ProSiteProfiles TRIAD supradomain profile. 381 663 IPR044066 -
Lal16g0446 665 Pfam Zinc finger, C3HC4 type (RING finger) 385 430 IPR018957 GO:0046872
Lal16g0446 665 SMART RWD2001b 197 330 IPR006575 GO:0005515
Lal16g0446 665 ProSitePatterns Zinc finger RING-type signature. 402 411 IPR017907 -
Lal16g0446 665 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 194 485 - -
Lal16g0446 665 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 500 605 - -
Lal16g0446 665 SMART ibrneu5 513 578 IPR002867 -
Lal16g0446 665 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 194 485 IPR031127 GO:0004842|GO:0016567
Lal16g0446 665 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 500 605 IPR031127 GO:0004842|GO:0016567
Lal16g0446 665 ProSiteProfiles RWD domain profile. 195 330 IPR006575 GO:0005515
Lal16g0446 665 MobiDBLite consensus disorder prediction 25 43 - -
Lal16g0446 665 Pfam RWD domain 197 325 IPR006575 GO:0005515
Lal16g0446 665 SUPERFAMILY RING/U-box 517 573 - -
Lal16g0446 665 SUPERFAMILY RING/U-box 608 662 - -
Lal16g0446 665 SUPERFAMILY RING/U-box 380 464 - -
Lal16g0446 665 SMART ring_2 614 643 IPR001841 -
Lal16g0446 665 SMART ring_2 385 432 IPR001841 -
Lal16g0446 665 SMART ring_2 531 560 IPR001841 -
Lal16g0446 665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 467 IPR013083 -
Lal16g0446 665 MobiDBLite consensus disorder prediction 1 64 - -
Lal16g0446 665 MobiDBLite consensus disorder prediction 45 61 - -
Lal16g0446 665 Gene3D Ubiquitin Conjugating Enzyme 195 331 IPR016135 -
Lal16g0446 665 SUPERFAMILY UBC-like 229 333 IPR016135 -
Lal16g0446 665 Gene3D - 498 607 - -
Lal16g0446 665 ProSiteProfiles Zinc finger RING-type profile. 385 433 IPR001841 -
Lal16g0446 665 Pfam IBR domain, a half RING-finger domain 520 564 IPR002867 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0446 384 588 C3H Transcription Factor Family AT2G31770 23.684 9.94e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0446 K11971 - gmx:100500662 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0446 16 2744783 2753516 Lal16g0446 16 2744783 2753516 ECH