Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0442 ATGGAGACCTACAGGGAGAGACTTCGTAATGAAATGGGTGAAGGAAGAGCTCACCTATCCAAGGAAGTTAAAAATGGGTTAGAATATTTGAAGCGTAAAAGGCTTCAGCGAGCTAAATCTGTAATTGACACCAACACAAGTATTGCGAACGTGATGAATAGAAGTGGAGGAGATGCTTTGAGAGCTTCGTCATCATGTGGTATTGGATTGCATGGTAATGCAGATCCCTTTTCCAAGCGGAAGGTGCATAAGTTTGACAGTAGTGATCTAGAATGGACTGATAAAATCCCAGAGTGTCCTGTGTATTCCCCATCGAAGGAGGAATTTGAGGATCCTTTGGCTTATTTACAGAAAATAGCACCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCGCCTTTGAGTGCTTCTGTTCCTGCTGGGGTTGTTCTGATGAAGGAGAATGCAGGATTCAAGTTTACCACAAGAGTGCAGCCTCTTCGCCTTGCTGAATGGGATACTGAAGACAAAGTCACGTTTTATATGAGTGGAAGAAATTACACATTCCGTGATTACGAGAAAATGGCGAACAAGGTTTTTGCGCGTAGATATTGCAGTGCTGGGTGTCTCCCTGCCACATACTTGGAAAAGGAATTTTGGAATGAAATCAGTTGTGGGAAGATGGAATCTGTGGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCACTGATCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCGAGGTTGCCTAAATCAATTTTGCGGCTCTTGGAAATGTCAATTCCGGGGGTAACGGAACCCATGCTATACATTGGAATGCTATTTAGTTTGTTTGCTTGGCACGTGGAAGATCATTACTTGTACAGCATTAATTATCAGCACTGTGGAGCATCAAAAACATGGTATGGTATTCCTGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTAAAAGAACATGTGTATACTAATGATATTTTGTCGAGCGATGGGGAAGATGGAGCTTTTGATGTTCTCTTGGGGAAAACAACACTTTTTCCACCAAATATTTTGATGGGACATGAAGTCCCGGTGTACAGGGCTGTTCAAAAACCGGGGGAGTTTATAATAACCTTCCCTAGGGCATATCATGCTGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAACTGGTGATTGGTTTCCTCTAGGGGCTATTGCTAGTCGTAGATATGCACATCTTAACAGGGTTCCTTTGCTGCCCTATGAAGAACTTCTATGCAAAGAGGCAATGCTTCTTCATACATGCTTGGAACCTGAAGATGTTGACTTTCCATCTCCTGACATGTTGTCTCATAATTGCATTAAGATTGCCTTTATCAATTTGATGCGTTTCCAGCATTGTGCATGTTGGTTGCTCAAGAATTCAAGGGCATGTATAAGCGTCTCTTCTCATTCTCATGGCACCATTCTATGTACCCTCTGCAAACGTGATTGTTATATAGCTTATGTTGACTGTAACTGTCACATGCATCCTGTATGCCTACGCCATGATATTGAATCTCTTGACCTCACATGTGGGAGCAAGTACACTCTTTATTTGAGGGAGGATATTTCAGATCTGGAAGCTGCAGCCAAGATATTTGAGCAGGTAGATGGGGCATTGGATGAGATACAAAGCGATCACAATCTGTATTCATATCCATTGTCAAATATGTTTCAGAGAGCGGAGGCAAAAGGATACACACCTTACTGTGAACTGAAACTTGATTCTGTTATTGAATTTTATGCAAGTCCGGAGCAGCCAGCAAATAATGATGAGTGTGGTACACAAAGTCAATCTGTTAATAGGGACTGTTCTGAAAATCTTAAACCAGAAGTCGAACCTCTTGAGAGCTCCTGTACTCCAAAATATGTAAGACCCGTGAATATGGCTATGGGGCATGCTAACTCCGATTTTGGCACTGTTGATTTTGAAGAGTTCAGTGGCAGGTTACCCAATAGTAGATGCGAATCTTCGCTACCCCCTGCTCACAATCATGAAAACTTGTGTAGACCGCTGGGTGTTCTTCATAGATTTGACACAAAACCCATTGTTTCTAATGAAAGTGATGATTCTGATTCAGAGATGTTTAGGGTAAAGCGCCCTTCTTCTCTGAAAGCGGAGAGGAGAAATATGAATGATACCATGTCTTCGAAACGTAGTGAGCAGCAGGGACTTAAACGATTGAAGAAAGTCCTTCCTGAAGGAAGAAGTAGGCTACCAACTGATTTCAGCAGAACCAATGAATCAAGTAACAAATATAGTCACCCTGCCAGTCATAAACTTGGTGGTGAAAATTCCTCCGGGGGCAGATTTGCAAGGAGTAATGGCATCCCCATATCTATAAGGTATAAGAAGTTAGGTAATGAAGAGATAAGTAGGCAACGAGATCACCCCATGAAAGAAAGGTTGCAGCAGACTTTGAAAGAATCCCAACCCGGTGATATAGGACAAAAGCGACTTAAAGTCAGAGGCCCTTCATTTTTGGGTTTAGAGAGCAGATCGAACTGA 2565 0.4207 METYRERLRNEMGEGRAHLSKEVKNGLEYLKRKRLQRAKSVIDTNTSIANVMNRSGGDALRASSSCGIGLHGNADPFSKRKVHKFDSSDLEWTDKIPECPVYSPSKEEFEDPLAYLQKIAPEASKYGICKIISPLSASVPAGVVLMKENAGFKFTTRVQPLRLAEWDTEDKVTFYMSGRNYTFRDYEKMANKVFARRYCSAGCLPATYLEKEFWNEISCGKMESVEYACDVDGSAFSSSPTDQLGNSKWNLKKLSRLPKSILRLLEMSIPGVTEPMLYIGMLFSLFAWHVEDHYLYSINYQHCGASKTWYGIPGHAALEFERVVKEHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILMGHEVPVYRAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFATGDWFPLGAIASRRYAHLNRVPLLPYEELLCKEAMLLHTCLEPEDVDFPSPDMLSHNCIKIAFINLMRFQHCACWLLKNSRACISVSSHSHGTILCTLCKRDCYIAYVDCNCHMHPVCLRHDIESLDLTCGSKYTLYLREDISDLEAAAKIFEQVDGALDEIQSDHNLYSYPLSNMFQRAEAKGYTPYCELKLDSVIEFYASPEQPANNDECGTQSQSVNRDCSENLKPEVEPLESSCTPKYVRPVNMAMGHANSDFGTVDFEEFSGRLPNSRCESSLPPAHNHENLCRPLGVLHRFDTKPIVSNESDDSDSEMFRVKRPSSLKAERRNMNDTMSSKRSEQQGLKRLKKVLPEGRSRLPTDFSRTNESSNKYSHPASHKLGGENSSGGRFARSNGIPISIRYKKLGNEEISRQRDHPMKERLQQTLKESQPGDIGQKRLKVRGPSFLGLESRSN 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0442 854 ProSiteProfiles JmjC domain profile. 246 416 IPR003347 -
Lal16g0442 854 Pfam C5HC2 zinc finger 496 547 IPR004198 -
Lal16g0442 854 MobiDBLite consensus disorder prediction 703 793 - -
Lal16g0442 854 MobiDBLite consensus disorder prediction 703 755 - -
Lal16g0442 854 Pfam jmjN domain 100 132 IPR003349 -
Lal16g0442 854 SMART cupin_9 243 416 IPR003347 -
Lal16g0442 854 MobiDBLite consensus disorder prediction 759 775 - -
Lal16g0442 854 ProSiteProfiles JmjN domain profile. 99 140 IPR003349 -
Lal16g0442 854 MobiDBLite consensus disorder prediction 805 854 - -
Lal16g0442 854 Gene3D Cupin 92 421 - -
Lal16g0442 854 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 64 850 - -
Lal16g0442 854 MobiDBLite consensus disorder prediction 805 823 - -
Lal16g0442 854 SMART JmjN_1 98 139 IPR003349 -
Lal16g0442 854 PANTHER LYSINE-SPECIFIC DEMETHYLASE 64 850 - -
Lal16g0442 854 Pfam JmjC domain, hydroxylase 276 399 IPR003347 -
Lal16g0442 854 SUPERFAMILY Clavaminate synthase-like 177 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0442 Lal-Chr16 2708662 2715030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0442 67 564 JUMONJI Transcription Factor Family AT2G34880 31.041 9.75e-63 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal16g0442 JmjC 1.8e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0442 - - gmx:100798611 1354.35