Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0426 ATGGCAGCTTGCACTGTCTACTCCACACAATCTCTCAAAACAAATTGCTTCATCTCAACCCCATCATCAAAAACACATTATGGTTTCCACAGCAAACAAATAGTATTATACAGCACAAGCAAGAGAAACAAGAGAGTTAACAATCCATATGTGATAACATGTGCAGCAGGTGATACACAAACAGTGGTGATTGGTCTTGCAGCAGATTCAGGATGTGGAAAGAGTACTTTCATGAGGAGACTAACAAGTGTGTTTGGTGGAACAGCAGAACCACCAAAAGGTGGTAACCCTGATTCCAACACACTCATTAGTGACACCACTACTGTTATATGCTTAGATGATTACCATTCTTTGGATAGAACTGGTAGAAAGGAAAAGGGTGTCACTGCACTTGATCCAAGAGCCAATGATTTTGATCTCATGTATGAACAAGTTAAGGCTATTAAGGATGGAGTTTCTGTTCAAAAACCAATTTACAATCATGTCACTGGTCTCTTGGATCCTCCTGAACTCATTAAACCACCCAAAATCTTAGTCATTGAAGGTTTGCATCCAATGTATGATGCTAGGGTTAGAGATCTCTTGGACTTCAGCATCTACTTAGACATTAGCAATGAAGTGAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAACGTGGACACAGTCTTGAAAGCATTAAGGCTAGCATTGAAGCAAGGAAGCCTGATTTTGATGCTTATATTGATCCTCAAAAGCAATATGCAGATGCAGTTATAGAAGTGTTGCCAACAGAACTCATTCCAGATGACAATGAAGGGAAGATTTTAAGAGTAAGGTTGATACAGAAAGAAGGGGTTAAGAATTTTAGCCCAGTTTACTTGTTTGATGATGGATCTACCATTTCATGGATACCATGTGGTAGAAAACTTACATGCTCTTACCCTGGAATCAAATTTGCCTATGGACCAGATGCTTACTTTGGAAATGAGGTATCAATTGTGGAAATGGATGGACAATTTGACAGATTAGATGAACTAATATATGTTGAGAGCCACTTAAGCAACCTCTCTTCAAAGTTCTATGGTGAAGTTACTCAACAAATGTTGAAACATGCTGATTTCCCTGGTAGCAACAATGGAACAGGTCTCTTCCAAACCATAGTTGGTTTAAAGATAAGAGAATTATATGAGCAGATAGTAGCCACCAGAGCTGAGACTCCAGTAAAAGCAGCAAAAGCTTAA 1224 0.3905 MAACTVYSTQSLKTNCFISTPSSKTHYGFHSKQIVLYSTSKRNKRVNNPYVITCAAGDTQTVVIGLAADSGCGKSTFMRRLTSVFGGTAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKDGVSVQKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTELIPDDNEGKILRVRLIQKEGVKNFSPVYLFDDGSTISWIPCGRKLTCSYPGIKFAYGPDAYFGNEVSIVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRELYEQIVATRAETPVKAAKA 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0426 407 Gene3D - 58 296 IPR027417 -
Lal16g0426 407 ProSitePatterns Phosphoribulokinase signature. 212 225 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lal16g0426 407 CDD PRK 63 351 - -
Lal16g0426 407 PANTHER PHOSPHORIBULOKINASE 6 407 - -
Lal16g0426 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 331 IPR027417 -
Lal16g0426 407 PRINTS Phosphoribulokinase family signature 68 85 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lal16g0426 407 PRINTS Phosphoribulokinase family signature 177 195 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lal16g0426 407 PRINTS Phosphoribulokinase family signature 212 229 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lal16g0426 407 PRINTS Phosphoribulokinase family signature 230 253 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lal16g0426 407 Pfam Phosphoribulokinase / Uridine kinase family 63 261 IPR006083 GO:0005524|GO:0016301
Lal16g0426 407 PANTHER URIDINE KINASE 6 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0426 Lal-Chr16 2582327 2585800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0426 115 289 PRT Gene Family AT3G27440 26.404 1.25e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0426 K00855 - gmx:100807126 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0426 16 2582327 2585800 Lal16g0426 16 2582327 2585800 ECH
Lal16g0426 16 2582327 2585800 Lal15g0369 15 2494060 2497637 LSH