LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal16g0426	ATGGCAGCTTGCACTGTCTACTCCACACAATCTCTCAAAACAAATTGCTTCATCTCAACCCCATCATCAAAAACACATTATGGTTTCCACAGCAAACAAATAGTATTATACAGCACAAGCAAGAGAAACAAGAGAGTTAACAATCCATATGTGATAACATGTGCAGCAGGTGATACACAAACAGTGGTGATTGGTCTTGCAGCAGATTCAGGATGTGGAAAGAGTACTTTCATGAGGAGACTAACAAGTGTGTTTGGTGGAACAGCAGAACCACCAAAAGGTGGTAACCCTGATTCCAACACACTCATTAGTGACACCACTACTGTTATATGCTTAGATGATTACCATTCTTTGGATAGAACTGGTAGAAAGGAAAAGGGTGTCACTGCACTTGATCCAAGAGCCAATGATTTTGATCTCATGTATGAACAAGTTAAGGCTATTAAGGATGGAGTTTCTGTTCAAAAACCAATTTACAATCATGTCACTGGTCTCTTGGATCCTCCTGAACTCATTAAACCACCCAAAATCTTAGTCATTGAAGGTTTGCATCCAATGTATGATGCTAGGGTTAGAGATCTCTTGGACTTCAGCATCTACTTAGACATTAGCAATGAAGTGAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAACGTGGACACAGTCTTGAAAGCATTAAGGCTAGCATTGAAGCAAGGAAGCCTGATTTTGATGCTTATATTGATCCTCAAAAGCAATATGCAGATGCAGTTATAGAAGTGTTGCCAACAGAACTCATTCCAGATGACAATGAAGGGAAGATTTTAAGAGTAAGGTTGATACAGAAAGAAGGGGTTAAGAATTTTAGCCCAGTTTACTTGTTTGATGATGGATCTACCATTTCATGGATACCATGTGGTAGAAAACTTACATGCTCTTACCCTGGAATCAAATTTGCCTATGGACCAGATGCTTACTTTGGAAATGAGGTATCAATTGTGGAAATGGATGGACAATTTGACAGATTAGATGAACTAATATATGTTGAGAGCCACTTAAGCAACCTCTCTTCAAAGTTCTATGGTGAAGTTACTCAACAAATGTTGAAACATGCTGATTTCCCTGGTAGCAACAATGGAACAGGTCTCTTCCAAACCATAGTTGGTTTAAAGATAAGAGAATTATATGAGCAGATAGTAGCCACCAGAGCTGAGACTCCAGTAAAAGCAGCAAAAGCTTAA	1224	0.3905	MAACTVYSTQSLKTNCFISTPSSKTHYGFHSKQIVLYSTSKRNKRVNNPYVITCAAGDTQTVVIGLAADSGCGKSTFMRRLTSVFGGTAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKDGVSVQKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTELIPDDNEGKILRVRLIQKEGVKNFSPVYLFDDGSTISWIPCGRKLTCSYPGIKFAYGPDAYFGNEVSIVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRELYEQIVATRAETPVKAAKA	407

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal16g0426	407	Gene3D	-	58	296	IPR027417	-
Lal16g0426	407	ProSitePatterns	Phosphoribulokinase signature.	212	225	IPR006082	GO:0005524\|GO:0005975\|GO:0008974
Lal16g0426	407	CDD	PRK	63	351	-	-
Lal16g0426	407	PANTHER	PHOSPHORIBULOKINASE	6	407	-	-
Lal16g0426	407	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	61	331	IPR027417	-
Lal16g0426	407	PRINTS	Phosphoribulokinase family signature	68	85	IPR006082	GO:0005524\|GO:0005975\|GO:0008974
Lal16g0426	407	PRINTS	Phosphoribulokinase family signature	177	195	IPR006082	GO:0005524\|GO:0005975\|GO:0008974
Lal16g0426	407	PRINTS	Phosphoribulokinase family signature	212	229	IPR006082	GO:0005524\|GO:0005975\|GO:0008974
Lal16g0426	407	PRINTS	Phosphoribulokinase family signature	230	253	IPR006082	GO:0005524\|GO:0005975\|GO:0008974
Lal16g0426	407	Pfam	Phosphoribulokinase / Uridine kinase family	63	261	IPR006083	GO:0005524\|GO:0016301

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal16g0426	Lal-Chr16	2582327	2585800	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal16g0426	115	289	PRT Gene Family	AT3G27440	26.404	1.25e-15	76.3

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal16g0426	K00855		-	gmx:100807126	736.102

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal16g0426	16	2582327	2585800	Lal16g0426	16	2582327	2585800	ECH
	Lal16g0426	16	2582327	2585800	Lal15g0369	15	2494060	2497637	LSH

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