Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0420 ATGGATAGTATTAGTAGTAGGTATGATAATGATGATGGAGGAGTTAGTGGTGGGGTGATTACAAAGCCTAGGCTGAGGTGGACGCCTGATCTTCACCACCGTTTTGTCGACGCCGTCACCAACCTTGGTGGCCCCGACAAGGCAACTCCCAAATCTGTTCTGAGGTTAATGGGCTTGAAAGGTTTAACACTATATCATCTCAAGAGTCATTTACAGAAGTATAGACTTGGACAGAACACCCAAAAACAAAATGAAGAACAGCACAAGGAGAACAATAGATGTTCATATGTAAATTTCTGTAGCCGTTCTTCAGGACCTAACACCAGTTACAGAGATAATAATGAAAGGGGAGAAATCGCAATAGCTAAAGCACTTAGGCACCAAATTGAAGTTCAAAAGAGATTGGAGGAGCAGCTTGAGGTGCAGAGGAAATTGCAGATGAGAATAGAGGCCCAAGGGATGTATTTGCAAGCTGTGTTAGAAAAAGCACAAAGGAGCTTTTCCATGTTTGGACCAGACAGGCTAGAAGCATCAAAAGCTAAATTGAATGAATTCAACTCTGCTTTGTCAAATTTTATGGAAAATGTCAATAAAGATTGCAAAGAAAACATAGTAGGAATGAATGGTTTTTATAGGAAATGCCATGGTTCATCATCTTTCCAAATTTATGAAGGAGGGATAAAAGAAAATAAGGATCAAATGCCTAAGGTTGAAGGGGGTACGAAGCTTGACTTAAACATCAAGGGTAGCTATGACCTTGTATCTGCAGGTGGACCTAAACTGGAAACCAAAAATGTAAACAAGTTTTGA 810 0.4 MDSISSRYDNDDGGVSGGVITKPRLRWTPDLHHRFVDAVTNLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQNTQKQNEEQHKENNRCSYVNFCSRSSGPNTSYRDNNERGEIAIAKALRHQIEVQKRLEEQLEVQRKLQMRIEAQGMYLQAVLEKAQRSFSMFGPDRLEASKAKLNEFNSALSNFMENVNKDCKENIVGMNGFYRKCHGSSSFQIYEGGIKENKDQMPKVEGGTKLDLNIKGSYDLVSAGGPKLETKNVNKF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0420 269 Pfam Myb-like DNA-binding domain 25 75 IPR001005 -
Lal16g0420 269 Gene3D - 21 79 - -
Lal16g0420 269 Pfam MYB-CC type transfactor, LHEQLE motif 120 165 IPR025756 -
Lal16g0420 269 SUPERFAMILY Homeodomain-like 20 79 IPR009057 -
Lal16g0420 269 Coils Coil 122 152 - -
Lal16g0420 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 79 IPR017930 -
Lal16g0420 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 19 255 IPR044848 GO:0003700
Lal16g0420 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 19 255 - -
Lal16g0420 269 MobiDBLite consensus disorder prediction 1 22 - -
Lal16g0420 269 Coils Coil 175 195 - -
Lal16g0420 269 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 22 77 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0420 Lal-Chr16 2546844 2552210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0420 22 191 G2-like Transcription Factor Family AT3G24120 52.247 5.17e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal16g0420 Myb_DNA-binding 1.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0420 - - gmx:100810146 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0420 16 2546844 2552210 Lal16g0420 16 2546844 2552210 ECH