Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0407 ATGGTTAAGCATAACAATGTCATCCCCAATGGTCACTTCCATAAGCATTGGCAAAACTATGTCAAGACCTGGTTCAATCAACCAGCAAGGAAAACAAGAAGACGGTTAGCTCGACAAAAGAAAGCCGTGAAGATTTTCCCTAGGCCTACAGCTGGACCTCTGAGACCTGTTGTTCATGGCCAAACTTTGAAGTACAACATGAAGGTCAGAGCCGGTAGGGGATTTTCTCTTGAAGAACTTAAGGCCGCTGGTATTCCGAAAAAGCTTGCCCCAACTATTGGAATTGCAGTCGATCATCGCCGCAAAAATCGTTCTCTGGAAAGTCTGCAAGCCAATGCACAAAGGCTGAAAACATACAAGGCCAAGTTGGTTGTTTTCCCAAGGCGTGCACACAAGGTTAAGTCTGGTGATTCTACTCCGGAGGAACTTGCAAATGCAACACAAGTCCAGGGATCATACCTTCCAATCACCACCGAGAAGCCAACTGTGGAGCTTGTTAAGGTTACAGATGAGTTGAAGGCATTCAAGGCTTATTACAAGCTCCGCCTTGAGCGCACAAACAAGCGCCATCACGGTGCCAGATTGAAGAGGGCTGCTGAGGCTGAAAAGGAAGAAAAGAAGTGA 624 0.4663 MVKHNNVIPNGHFHKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRKNRSLESLQANAQRLKTYKAKLVVFPRRAHKVKSGDSTPEELANATQVQGSYLPITTEKPTVELVKVTDELKAFKAYYKLRLERTNKRHHGARLKRAAEAEKEEKK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0407 207 Coils Coil 192 207 - -
Lal16g0407 207 MobiDBLite consensus disorder prediction 188 207 - -
Lal16g0407 207 Gene3D - 167 207 - -
Lal16g0407 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
Lal16g0407 207 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Lal16g0407 207 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Lal16g0407 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 - -
Lal16g0407 207 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0407 Lal-Chr16 2476487 2478406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0407 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 86.387 1.09e-124 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0407 K02873 - gmx:100305489 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0407 16 2476487 2478406 Lal15g0353 15 2384125 2386070 LSH
Lal16g0407 16 2476487 2478406 Lal23g1154 23 12980453 12982489 LSH