Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0403 ATGTCCCTTCTCAGCAGATTCTTCTACAAGAGACCCCCAGATGGGTTACTCGAATTCATCGACAGAGTTTACGTTTTCGATTCTTGCTTCTGCACTGAAGCATTACCCGAAGGAATGTATCAACTCTACCTTCACGAAATCATCACCGAGTTGCATGAAGAGTTTCCAGAATCATCTTTTCTCGCTTTCAATTTCCACGAAGGCGAGAAACGAAGTGAATTCGCTGAAATATTAGTTGAGTACGATGCAACCGTGATAGATTATCCGAAACAAAGGGTGCATAGTCATGAACGTAGAACCCTTGATATGGTTTATAGAGAGGCACCAAAGGGTTTGTTGCAGTTGTTGTCGCCTTTTAACCCTTTGCCCTCACAGCTTCGTTATATTCAGTATGTGGCTAGAAGGAACATTGTACCAGAGTGGCCACCGCCCGAGCGAGCTTTGTCGCTGGATTGTGTCATTCTTAGAGCAATTCCTACTTTTGATTCGCTGAATGGGTGTAGGCCAATGGTTAGGATTTTTGGTAGGAATTTGCTTAGTAAAGGTGGGCTAAAAACCCAGATGATCTATTCCATGCACAAGAAAAAGAAGACCTTGAAGCATTACCGCCAGGTTCGCGGGGCAGACTGTGATGTGATTAAGATTGATATTCAATGTTTGGTGCAAGGAGATGTGGTGTTGGAGTGTGTCCATATGGATTTGGATCCAGAGAGAGAAGTGATGATGTTTCGTGTGATGTTCAACACGGCATTTATTCGGTCCAACATATTGATGCTGGACGCTGGAAACTTGGACATTCTGTGGGATTCAAAGGATCGGTATCCAAAAGGCTTCCGAACTGAGGTTTTGTTTGGAGATGTTGGAAGCATAAGTCCTGTAAGGGCTCCAACAGCCATGTTAAACGGCGAAGAGAAAGGTGGATTGCCAATTGAAGCATTTTCAAAGGTTCAAGAACTTTTTAGTGGTGCTGAATGGGATGAAAGTGGTGATGCCGCTGCCGTCTGGCTGCTTCAACAGCTTAGTGTCTTAAATGACGTCAAAGAGTTTTCGAAGTTGCAAGGGAAGGGAAGTTGGTATTCGCCACCTGCTGACTCTGAAGATGAAAATAATGAATCAAGCACTGCTGATAGTTCAGATTACACTTTTGATGTTATTTCCAAGACTTCTTCCGTTGATCCTTCAAAATTATCGACATCTGACATCTCTGATTCAGCCCATTTAGCTTTTGAGAGCGATGGTGGAAATCATGCAAGCCTCACTTCAAGAATGCCTGATAAGTCATTAACAGGTAATGTTCCATCATCTCTTTGTTTATCTCCGCTGTTGCCTTCACCAGTTCCTACTACTCAAATTCAGCCTCCATCACCAGCACAAACACCACCACCCCCACCTCCACCATTCTCTGATAAGACGCCTTCTCTACCCTTGTCTAATAAAGCGCCACCTCCTCCACCACCACCTCCCCCAGAGTCTAGACAAATAGGGTTGGCTCCACCGCCTCCACCTCCTCCAGGATCTAGGCAAACAGGGTCAGCCCCACCACCTCCACCTCCACCTCCTCCAGGATCTAGGCAGACAGGGTCGGCCCCACCGCCTCCACCTCCACCTTCCCTAGGACCTCAATGTATAGCCCCACCACCTCCATCTCCTCCAGGTGCACGAACGGGTTCAGCTCCACCACCCCCACCTCCACCCCTTCCAGGACCTAAGCGAACAGGTTCAGCTCCACCACCTCCACCCCTTCCAGGACCTAAGCGAACGGGTTCAGCTCCACCACCTCCACCACCAACACCAAGGCCTCCAAGTGCTCCTCCTCCACCACCTGGTCGTGGTGCAACACCAGCACCACCACCTCCACCTGCAGGAAGGGCCACTGGTGTGCCACCACCAGCAGGCAAATCTTCTTTAGCACCAACTAATGTTGGAAAAGGTCGCGGTAGTGGTGGGACCACTGCTGCTACTAAGAAAACTTTATTAAAGCCCTTGCACTGGGTGAAAGTTGCTCGAGCAGCAAAAGGGAGTCTATGGGCAGATTCACAAAAACAAGAGAATGAATCAAGGTACTGA 2067 0.4804 MSLLSRFFYKRPPDGLLEFIDRVYVFDSCFCTEALPEGMYQLYLHEIITELHEEFPESSFLAFNFHEGEKRSEFAEILVEYDATVIDYPKQRVHSHERRTLDMVYREAPKGLLQLLSPFNPLPSQLRYIQYVARRNIVPEWPPPERALSLDCVILRAIPTFDSLNGCRPMVRIFGRNLLSKGGLKTQMIYSMHKKKKTLKHYRQVRGADCDVIKIDIQCLVQGDVVLECVHMDLDPEREVMMFRVMFNTAFIRSNILMLDAGNLDILWDSKDRYPKGFRTEVLFGDVGSISPVRAPTAMLNGEEKGGLPIEAFSKVQELFSGAEWDESGDAAAVWLLQQLSVLNDVKEFSKLQGKGSWYSPPADSEDENNESSTADSSDYTFDVISKTSSVDPSKLSTSDISDSAHLAFESDGGNHASLTSRMPDKSLTGNVPSSLCLSPLLPSPVPTTQIQPPSPAQTPPPPPPPFSDKTPSLPLSNKAPPPPPPPPPESRQIGLAPPPPPPPGSRQTGSAPPPPPPPPPGSRQTGSAPPPPPPPSLGPQCIAPPPPSPPGARTGSAPPPPPPPLPGPKRTGSAPPPPPLPGPKRTGSAPPPPPPTPRPPSAPPPPPGRGATPAPPPPPAGRATGVPPPAGKSSLAPTNVGKGRGSGGTTAATKKTLLKPLHWVKVARAAKGSLWADSQKQENESRY 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0403 688 SMART PTEN_C2_2 143 286 IPR014020 -
Lal16g0403 688 MobiDBLite consensus disorder prediction 640 654 - -
Lal16g0403 688 MobiDBLite consensus disorder prediction 414 445 - -
Lal16g0403 688 MobiDBLite consensus disorder prediction 363 378 - -
Lal16g0403 688 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 145 286 IPR035892 -
Lal16g0403 688 MobiDBLite consensus disorder prediction 353 378 - -
Lal16g0403 688 ProSiteProfiles C2 tensin-type domain profile. 145 287 IPR014020 -
Lal16g0403 688 Pfam C2 domain of PTEN tumour-suppressor protein 144 285 IPR014020 -
Lal16g0403 688 MobiDBLite consensus disorder prediction 411 656 - -
Lal16g0403 688 PANTHER FORMIN-LIKE PROTEIN 12-RELATED 92 674 - -
Lal16g0403 688 PANTHER FORMIN-LIKE PROTEIN 12-RELATED 1 91 - -
Lal16g0403 688 Gene3D - 142 289 - -
Lal16g0403 688 MobiDBLite consensus disorder prediction 446 626 - -
Lal16g0403 688 PANTHER FORMIN-J 1 91 - -
Lal16g0403 688 PANTHER FORMIN-J 92 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0403 Lal-Chr16 2432367 2441161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0403 1 387 FH2 protein (formin) Gene Family AT1G31810 62.896 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0403 - - lang:109349024 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0403 16 2432367 2441161 Lal15g0349 15 2359859 2369270 LSH
Lal16g0403 16 2432367 2441161 Lal23g1156 23 13005387 13015046 LSH