Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0395 ATGGAGAGCACAAGAATAGGCAAGTGGTTAAACCTTATAGTAGTAGGTGCACTGCTATTACTGAAAACAGAAGGTTCTTCTTATGTACCAATCACTTATGTCCAGAATGCGGTAGCCAAAGGAGCCGTTTGTTTGGATGGAAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGTGCAGGGATTAATAGTTGGTTACTTCAATTTGAGGGTGGTGGATGGTGCAACAATGTCACTACTTGCCTTAATCGTAAGAACAATCGTTTAGGTTCATCTAAGCAAATGGCCAAGCAAATTGCCTTTTCAGGAATTTTAGGTGACAAGCAACAATTTAATCCAGATTTCTACAATTGGAACAGAATCAAGGTTAGGTACTGTGATGGTGCATCATTTACTGGTGATGTGGAAACAGTCAATCCTGTAACCAAGTTGCACTTCAGAGGAGCAAGGGTTTTCGCTGCTGTCATTGAGGATTTACTGGCGAAGGGAATGAAAAATGCTCGAAATGCTATTATCTCTGGATGTTCAGCTGGAGGATTGGCCTCAATATTGCATTGTGATCGCTTTCAATCTTTATTACCTAGGGGAGCTAAAGTGAAATGCATCTCAGATGCTGGTTATTTCATCAATGCAAGGGATGTCTCTGGAACACGACACATTGAACAGCTCTTCAGTGAAATTGTTGCCACACATGGATCTGCAAGAAATTTGCCTCCATCCTGCACTTCAAGACTCAGCCCAGGGATGTGCTTTTTCCCGCAATATTTTGTATCGCAAATCGCTACACCAATCTTCCTTATAAATGCGGCATATGACTCATGGCAGATTAAAAACATTTTGGCACCGGGTGTTGCTGATCCCCATGGCCGTTGGCATAGCTGCAAGCTTGATATAAACAACTGCTCACCTAATCAACTTGGTACAATGCAAGGCTTCAGGACAGAATTCTTAAGGGCACTGACTGTGCTAGGGAACTCTGAATCTAAAGGAATGTTTATAGACTCTTGCTATGCTCACTGCCAAACTGAAATGCAGGAGACATGGTTTACAAGTGACTCTCCTCTACTGGCCAAGACAACAATTGCAGAGGCAGTAGCAGACTGGTTTTATGATCGAAGGCTTTTCCATCAAATAGATTGTGCATACCCTTGCAATCCAAGTTGTCCCAACCGCATTTTTTATCACGACAACCCTGCAGTATAA 1203 0.4248 MESTRIGKWLNLIVVGALLLLKTEGSSYVPITYVQNAVAKGAVCLDGSPPAYHFDKGFGAGINSWLLQFEGGGWCNNVTTCLNRKNNRLGSSKQMAKQIAFSGILGDKQQFNPDFYNWNRIKVRYCDGASFTGDVETVNPVTKLHFRGARVFAAVIEDLLAKGMKNARNAIISGCSAGGLASILHCDRFQSLLPRGAKVKCISDAGYFINARDVSGTRHIEQLFSEIVATHGSARNLPPSCTSRLSPGMCFFPQYFVSQIATPIFLINAAYDSWQIKNILAPGVADPHGRWHSCKLDINNCSPNQLGTMQGFRTEFLRALTVLGNSESKGMFIDSCYAHCQTEMQETWFTSDSPLLAKTTIAEAVADWFYDRRLFHQIDCAYPCNPSCPNRIFYHDNPAV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0395 400 PANTHER PECTIN ACETYLESTERASE 3 396 - -
Lal16g0395 400 Pfam Pectinacetylesterase 26 373 IPR004963 GO:0016787
Lal16g0395 400 PANTHER NOTUM-RELATED 3 396 IPR004963 GO:0016787
Lal16g0395 400 SUPERFAMILY alpha/beta-Hydrolases 145 274 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0395 Lal-Chr16 2386450 2395244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0395 5 393 Carbohydrate Esterase AT4G19420 61.321 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0395 K19882 - gmx:100776478 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0395 16 2386450 2395244 Lal16g0395 16 2386450 2395244 ECH
Lal16g0395 16 2386450 2395244 Lal23g1165 23 13053370 13057821 LSH