Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0380 ATGCCAGTAAACTGCATAGCACCAAAACCACAATATTCTAATAGTAGTAGTCACTCAATGGAAGACCCACCAGATCAGACTGAGCCCCATAATCCAAGTGTCTTTGCCACTATGTACCCCATAACTTTGAAGTTTGAGGAATTGGTCTACAAAGTTAAACTAGAGCATAAAGGGATATGTTGGGGCAGCACAGGGTCTGGCAAAGAGAAGACCATATTGAATGGGATGTCAGGTGTAGTATGCCCAGGAGAAATACTGGCTATGCTGGGGCCATCAGGTAGTGGCAAGACCACACTTCTTACTGCTCTCGGAGGCCGACTCGGCGGTAAAATATCAGGAAAGATGACATACAACAATCAGCCTTTCTCAGGTTCCATAAAGAGAAGAACAGGTTTTGTATCTCAGGATGATGTGCTATACCCTCATCTTACTGTCACTGAAACACTACTCTTCACTGCACTTCTAAGGCTTCCTAACAGCTTAACAAGAGATGAAAAAGTTCAGCATGTAGAAAGAGTTATTGCTGAGCTAGGATTGACTAGGTGCAGGAGCAGCATGATTGGAGGGCCATTGTTCAGAGGAATATCAGGTGGTGAGAAAAGGAGAGTGAGCATTGGCCAGGAAATGCTCATCAATCCAAGCCTGCTGTTGCTGGATGAGCCTACTTCAGGTTTGGATTCCACCACTGCTCTAAGGATCCTCAGCACAATCAAACGGCTCGCAAGTGGTGGTAGAACTGTTATCACTACCATTCATCAACCCTCTAGCCGCCTCTACTATATGTTCGATAAAGTGGTCTTGATCTCTGAAGGATGTCCTATCTATTATGGTCCTGCTTCAACTGCCTTGAACTATTTTTCATCACTTGGTTTTTCTACTTGTGTTACTGTCAATCCAGCTGATCTCTTGCTTGATCTTGCTAATGGGATTGCCCCGGACTCGAAGCATGCAACTGAACAAAGCGAGAGTCTGGAACAAGAAAGGAAAGTGGTAAGAGAAGCTCTCATATCTGCTTATGACAAAAACATAGCTACAAGGTTGAAAGCTGAGCTTTGCAGCCTGGAGCTGAACAATTACAATATCACAAAGGATGCTTGCACAAGGAATCAGGTAAAACATGAGCAATGGTGCACAAGCTGGTGGCATCAGTTCAAAGTACTATTACAAAGGGGAGTGAGGGAACGAAGGCATGAAGCCTTCAACAAGCTTAGAATATTCCAAGTCATAAGTGTAGCTTTTCTTGGTGGACTTTTGTGGTGGCAGACACCAGAATCACGCATTCAAGACCGGGTGGCATTGATATTTTTCTTCTCAGTTTTCTGGGGATTCTACCCTCTCTACAATGCAGTTTTCACATTTCCTCAAGAGAGGAGAATGCTAATCAAGGAACGGTCGTCAGGAATGTATCGCCTTTCATCCTACTTTCTAGCTAGAACAATAGGAGACTTGCCACTGGAGCTTGCACTTCCAACAGCATTTGTGATCATAATCTATTGGATGGGAGGACTTAAACCTGATCCTGTGACTTTTATCCTTTCACTTATTGTGGTTCTTTACAGTGTTCTTGTCTCTCAAAGTCTTGGCTTAGCATATGGTGCCATCTTGATGGAGATTAAACAGGCAACTACTCTAGCTTCTGTGACAACCTTTGTATTTCTCATTGCTGGAGGATACTATGTACAGCAGATTCCTATCTTCATCGTATGGCTCAAGTATTTGAGCTACAGCTACTACTGTTACAAGCTACTTCTTGGTGTCCAGTACAATGAAAATGATTATTATGAGTGCTTAGAAGGGGTATTATGCAAAGTTGTAGATTTTCCACCTATAAGATCAATGGGGTTAAATCATATGTGGCTTGATGTATCCATTATGGCACTGATGTTGGTTGGTTATCGACTAGTTGCTTATTTAGCACTGCGTAGAGTGAGGTAA 1935 0.4295 MPVNCIAPKPQYSNSSSHSMEDPPDQTEPHNPSVFATMYPITLKFEELVYKVKLEHKGICWGSTGSGKEKTILNGMSGVVCPGEILAMLGPSGSGKTTLLTALGGRLGGKISGKMTYNNQPFSGSIKRRTGFVSQDDVLYPHLTVTETLLFTALLRLPNSLTRDEKVQHVERVIAELGLTRCRSSMIGGPLFRGISGGEKRRVSIGQEMLINPSLLLLDEPTSGLDSTTALRILSTIKRLASGGRTVITTIHQPSSRLYYMFDKVVLISEGCPIYYGPASTALNYFSSLGFSTCVTVNPADLLLDLANGIAPDSKHATEQSESLEQERKVVREALISAYDKNIATRLKAELCSLELNNYNITKDACTRNQVKHEQWCTSWWHQFKVLLQRGVRERRHEAFNKLRIFQVISVAFLGGLLWWQTPESRIQDRVALIFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVIIIYWMGGLKPDPVTFILSLIVVLYSVLVSQSLGLAYGAILMEIKQATTLASVTTFVFLIAGGYYVQQIPIFIVWLKYLSYSYYCYKLLLGVQYNENDYYECLEGVLCKVVDFPPIRSMGLNHMWLDVSIMALMLVGYRLVAYLALRRVR 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0380 644 CDD ABCG_EPDR 40 277 - -
Lal16g0380 644 Pfam ABC-2 type transporter 383 588 IPR013525 GO:0016020|GO:0140359
Lal16g0380 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 287 IPR027417 -
Lal16g0380 644 Gene3D - 56 289 IPR027417 -
Lal16g0380 644 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 33 642 - -
Lal16g0380 644 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 33 642 - -
Lal16g0380 644 MobiDBLite consensus disorder prediction 1 32 - -
Lal16g0380 644 ProSitePatterns ABC transporters family signature. 195 209 IPR017871 GO:0005524
Lal16g0380 644 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 295 IPR003439 GO:0005524
Lal16g0380 644 MobiDBLite consensus disorder prediction 8 22 - -
Lal16g0380 644 Pfam ABC transporter 73 223 IPR003439 GO:0005524
Lal16g0380 644 SMART AAA_5 82 272 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0380 Lal-Chr16 2299106 2302225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0380 72 256 Calmodulin-binding Proteins AT2G36910 29.843 9.65e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0380 K05681 - gmx:100794774 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0380 16 2299106 2302225 Lal16g0380 16 2299106 2302225 ECH
Lal16g0380 16 2299106 2302225 Lal15g0322 15 2165013 2168050 LSH
Lal16g0380 16 2299106 2302225 Lal23g1174 23 13125679 13128510 LSH