Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal16g0367 | ATGACACGCGCTCTTAGATTTCTTACCGATAATGTCACGGCGGTGGCAGAGGCTGCGCCGCCGCCGGAGCCTAGGGAATTGGAATCCGATTTCGTTGTGATCCTGGCAGCGCTACTCTGCGCCTTAATATGCGTGGTGGGACTAATCGCCGTCGCACGGTGCGCGTGGCTCCGGCGAGCTACCGGCGTTGGGAGCTTGCCGGCGAATGTTCTTGCGAACAAAGGGCTGAAGAAGAAGGTGCTTCAATCGCTTCCGAAGTTCACTTACGTGGATAGCAACTCGAGCAAGTGGCTAGCGACGCCGGAATGCGCGATTTGCCTGTCGGAGTTTGCCTCCGGCGAGGAGATTCGGGTGCTGCCGCAGTGCGGGCACGGGTTCCACGTGGGATGCATAGACACGTGGCTTGGGTCCCACTCTTCATGTCCAACCTGCCGACAAGTCCTGGCCGTTTCTAGGTGCCAGAAGTGTGGGCGGTTCCCTGCAGTTGGCGGCGGCGGTGACAGCACAACTAACTGTGCAACGGTTTATGAACCGGAGCTAAAGTCAAGAGAAGAGAACAATGCAGCTGTTAATAATAATAAGAGCGGTGGTAGCAGTTGTAGTAACATGGTTGTACATCAAAGCCATAACGGTAGCAGTAATTTTCTGCCTTAA | 654 | 0.5535 | MTRALRFLTDNVTAVAEAAPPPEPRELESDFVVILAALLCALICVVGLIAVARCAWLRRATGVGSLPANVLANKGLKKKVLQSLPKFTYVDSNSSKWLATPECAICLSEFASGEEIRVLPQCGHGFHVGCIDTWLGSHSSCPTCRQVLAVSRCQKCGRFPAVGGGGDSTTNCATVYEPELKSREENNAAVNNNKSGGSSCSNMVVHQSHNGSSNFLP | 217 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal16g0367 | 217 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED | 1 | 168 | - | - | |
Lal16g0367 | 217 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 1 | 168 | - | - | |
Lal16g0367 | 217 | SUPERFAMILY | RING/U-box | 80 | 150 | - | - | |
Lal16g0367 | 217 | ProSiteProfiles | Zinc finger RING-type profile. | 103 | 145 | IPR001841 | - | |
Lal16g0367 | 217 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 150 | IPR013083 | - | |
Lal16g0367 | 217 | CDD | RING-H2_PA-TM-RING | 102 | 145 | - | - | |
Lal16g0367 | 217 | Pfam | Ring finger domain | 102 | 145 | IPR001841 | - | |
Lal16g0367 | 217 | SMART | ring_2 | 103 | 144 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal16g0367 | Lal-Chr16 | 2211371 | 2212024 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal16g0367 | 1 | 156 | C3H Transcription Factor Family | AT1G76410 | 61.585 | 1.32e-60 | 186 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal16g0367 | - | - | gmx:100787383 | 297.745 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal16g0367 | 16 | 2211371 | 2212024 | Lal15g0305 | 15 | 2039303 | 2039950 | LSH | |
Lal16g0367 | 16 | 2211371 | 2212024 | Lal23g1188 | 23 | 13239991 | 13240638 | LSH | |
Lal16g0367 | 16 | 2211371 | 2212024 | Lal15g1552 | 15 | 17531089 | 17531730 | PCT | |
Lal16g0367 | 16 | 2211371 | 2212024 | Lal16g1804 | 16 | 17148228 | 17148821 | PCT | |
Lal15g1552 | 15 | 17531089 | 17531730 | Lal16g0367 | 16 | 2211371 | 2212024 | PCT | |
Lal16g1804 | 16 | 17148228 | 17148821 | Lal16g0367 | 16 | 2211371 | 2212024 | PCT |