Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0367 ATGACACGCGCTCTTAGATTTCTTACCGATAATGTCACGGCGGTGGCAGAGGCTGCGCCGCCGCCGGAGCCTAGGGAATTGGAATCCGATTTCGTTGTGATCCTGGCAGCGCTACTCTGCGCCTTAATATGCGTGGTGGGACTAATCGCCGTCGCACGGTGCGCGTGGCTCCGGCGAGCTACCGGCGTTGGGAGCTTGCCGGCGAATGTTCTTGCGAACAAAGGGCTGAAGAAGAAGGTGCTTCAATCGCTTCCGAAGTTCACTTACGTGGATAGCAACTCGAGCAAGTGGCTAGCGACGCCGGAATGCGCGATTTGCCTGTCGGAGTTTGCCTCCGGCGAGGAGATTCGGGTGCTGCCGCAGTGCGGGCACGGGTTCCACGTGGGATGCATAGACACGTGGCTTGGGTCCCACTCTTCATGTCCAACCTGCCGACAAGTCCTGGCCGTTTCTAGGTGCCAGAAGTGTGGGCGGTTCCCTGCAGTTGGCGGCGGCGGTGACAGCACAACTAACTGTGCAACGGTTTATGAACCGGAGCTAAAGTCAAGAGAAGAGAACAATGCAGCTGTTAATAATAATAAGAGCGGTGGTAGCAGTTGTAGTAACATGGTTGTACATCAAAGCCATAACGGTAGCAGTAATTTTCTGCCTTAA 654 0.5535 MTRALRFLTDNVTAVAEAAPPPEPRELESDFVVILAALLCALICVVGLIAVARCAWLRRATGVGSLPANVLANKGLKKKVLQSLPKFTYVDSNSSKWLATPECAICLSEFASGEEIRVLPQCGHGFHVGCIDTWLGSHSSCPTCRQVLAVSRCQKCGRFPAVGGGGDSTTNCATVYEPELKSREENNAAVNNNKSGGSSCSNMVVHQSHNGSSNFLP 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0367 217 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 168 - -
Lal16g0367 217 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 168 - -
Lal16g0367 217 SUPERFAMILY RING/U-box 80 150 - -
Lal16g0367 217 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Lal16g0367 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 150 IPR013083 -
Lal16g0367 217 CDD RING-H2_PA-TM-RING 102 145 - -
Lal16g0367 217 Pfam Ring finger domain 102 145 IPR001841 -
Lal16g0367 217 SMART ring_2 103 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0367 Lal-Chr16 2211371 2212024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0367 1 156 C3H Transcription Factor Family AT1G76410 61.585 1.32e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0367 - - gmx:100787383 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0367 16 2211371 2212024 Lal15g0305 15 2039303 2039950 LSH
Lal16g0367 16 2211371 2212024 Lal23g1188 23 13239991 13240638 LSH
Lal16g0367 16 2211371 2212024 Lal15g1552 15 17531089 17531730 PCT
Lal16g0367 16 2211371 2212024 Lal16g1804 16 17148228 17148821 PCT
Lal15g1552 15 17531089 17531730 Lal16g0367 16 2211371 2212024 PCT
Lal16g1804 16 17148228 17148821 Lal16g0367 16 2211371 2212024 PCT