Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0362 ATGGCACCAGGGACTGGTTGCACATCTGAGACAAGTACAATGAGTAGTGGTGGTGAGAGCCTCAAGGGTGAGAGTAATAGTGTTGAGTTTAGTATGGAGGATCAGAATGGTGATACATTGGGAAGTTTGAATCAGAATATTGGAAAACCTCCAAGGGATCACTCTTCTATGCGCCATTGCACCAGCTCTTCATGGCTTCTTGAATCGGAACCAGATATTATGATTGTAGGCTTGAAACCAACCAGTGAAGAGAAGTCAGAGTTTTCACCTATATTGAGGTCTGGAAGCTGTTCTGAGAAGGGACCAAAGCAGTACATGGAGGATGAGTATATCTGTGTTGATATTCTTGGTGAACATGTTGGTCCGGGAACGGACCTTCCTTCTCCAGCAGCATTTTATGGGGTATTTGATGGGCATGGTGGTATTGATGCAGCAGCATTTACCAAAAAGAACATCCTTAACTTTATAATTAAAGACTCTCAGTTCCCGTCAGGCATTAAGAAAGCTGTTAAGAATGCATTTGTGAAGGTTGATCATGAATTTAAAGATGCTAGTGCTCTTGATAGTTCTTCGGGAACCACTGCTCTCACAGCCCTCGTGTTGGGAAGGGGCATGCTAATTGCCAATATTGGAGATTCACGTGCTGTATTAGGCAAAAGGGGAAGAGCTATTGAACTTTCTAAAGACCATAAACCAAATTGCACTTCAGAAAGATTAAGAATTGAGAAACTAGGTGGTGTCATTTATGATGGATACCTGAATGGCCAACTATCAGTGGCTCGTGCTCTTGGAGATTGGCACATAAAAGGTTCTAAAGGTTCTAAAAGTCCTTTAAGCTCAGAGCCAGACTTGGAAGAGATTGCTCTGACAGAAGAAGATGAATTTTTGATTATAGGGTGTGATGGATTATGGGATGTGATGAGTAGTCAATGTGCTGTTACAATGGTAAGGAGGGAACTCATGCAGCATAATGATCCAACAACATGTGCAAAGGCACTAGTGACCGAGGCGCTTCAGCGCAATACATGCGACAATCTAACAGTTGTGGTGGTTTGTTTCTCCAAAGATCCACCTCCTAAGATTGAAATCCCTAGATCACATAGGAGGAGGAGTATTTCAGCTGAAGGCCTTGATCTTCTCAAAGGTGTCTTAAATGGTAGATGA 1164 0.4261 MAPGTGCTSETSTMSSGGESLKGESNSVEFSMEDQNGDTLGSLNQNIGKPPRDHSSMRHCTSSSWLLESEPDIMIVGLKPTSEEKSEFSPILRSGSCSEKGPKQYMEDEYICVDILGEHVGPGTDLPSPAAFYGVFDGHGGIDAAAFTKKNILNFIIKDSQFPSGIKKAVKNAFVKVDHEFKDASALDSSSGTTALTALVLGRGMLIANIGDSRAVLGKRGRAIELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGSKGSKSPLSSEPDLEEIALTEEDEFLIIGCDGLWDVMSSQCAVTMVRRELMQHNDPTTCAKALVTEALQRNTCDNLTVVVVCFSKDPPPKIEIPRSHRRRSISAEGLDLLKGVLNGR 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0362 387 ProSiteProfiles PPM-type phosphatase domain profile. 93 353 IPR001932 -
Lal16g0362 387 SMART PP2C_4 83 351 IPR001932 -
Lal16g0362 387 PANTHER PROTEIN PHOSPHATASE 2C 47-RELATED 31 375 - -
Lal16g0362 387 SUPERFAMILY PP2C-like 86 354 IPR036457 -
Lal16g0362 387 MobiDBLite consensus disorder prediction 1 58 - -
Lal16g0362 387 Gene3D - 78 357 IPR036457 -
Lal16g0362 387 Pfam Protein phosphatase 2C 94 345 IPR001932 -
Lal16g0362 387 PANTHER PROTEIN PHOSPHATASE 2C 31 375 IPR015655 GO:0004722|GO:0006470
Lal16g0362 387 ProSitePatterns PPM-type phosphatase domain signature. 132 140 IPR000222 GO:0043169
Lal16g0362 387 CDD PP2Cc 93 353 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0362 Lal-Chr16 2179833 2182582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0362 86 385 PP2C-type Phosphatase Gene Family AT3G51470 77.667 5.95e-176 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0362 K14803 - gmx:100786416 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0362 16 2179833 2182582 Lal15g0303 15 2031007 2033026 LSH
Lal16g0362 16 2179833 2182582 Lal23g1192 23 13258509 13266808 LSH