Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0358 ATGTCGTGTTCATCGTCATCAGGATCGGGAGAAGATGATGAAGGATTCGATTCCTACCGTAAAGGAGGGTACCACGCCGTTAGGGTCGCCGATCAATTCGCCGGCGGAAGGTACATAGCGCAGAGGAAGCTTGGTTGGGGTCAATTCTCCACCGTATGGCTTGCTTATGATACCCACTCATCTTCATATGTTGCTCTCAAAATCCAGAAAAGTGCAGCCGAGTTTGTTCAGGCTGCCCTTCATGAGATCAATGTCCTTTCATCAATTGCTGAGGGTGGTCCTATAAATTCGAAGTGTGTTGTCCAATTGATTGAACATTTTAAGCACACAGGCCCAAATGGCCAGCACCTTTGCATGGTCCTTGAGTTTCTTGGTGATAGCTTGCTCCGTTTGATCAAATATAACCGTTACAAAGGCCTTCCTTTGAATAAAGTTAGGGAGATTTGCAAGTGCATTTTGATTGGCTTGGATTACTTGCATAGAGAACTTGGTATAATCCACACTGACCTAAAACCTGAAAACATTCTTCTATTTTCAACCATAGATCATTCCAAAGACCCTTGTAGATCTGGACTCTCCCCAATTATAGAGAGGCCCGAGGGAAACATAAACGGTGGAGTTACAAGTCTTATTGAGAAAAGGTTGAAAAGGAGAGCAAGGAGGGCAGTTGCAAAGATATCATTAAGAGATTCAATGGGAGGAGCAGGAGAAGCTCCAAAGTCTGATAGAAATATTAATGGGATCGATGTGAGATGCAAAATAGTAGATTTCGGAAATGCGTGTTGGGCTGATAAGCCCCTTGCAGAAGAAATACAGACAAGGCAGTACAGAGCTCCTGAAGTTATACTGAAGGCTGGATATTCCTTTTCGGTCGACCTGTGGTCTTTTGCTTGCATAGCATTTGAGCTTGCCACTGGTGATATGTTGTTTACACCCAAGGGTGGTGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGATTGCTATTGCCGGAGCACAATCGAAGGATTTCTTTGACAGACATGGGGACCTGAAAAGGATTAGAAGGCTGAAATTTTGGCCACTTGAAAAATTACTCATTAATAGGTATAAGTTCTCAGAGAAAGATGCTGGTGAGTTCTCTGAATTTCTTTTACCACTTCTTGACTTTGCACCAGAGAAGCGACCAACTGCAGAACAGTGCCTGCAGCACCCATGGCTGAACTGCTAG 1248 0.4439 MSCSSSSGSGEDDEGFDSYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTHSSSYVALKIQKSAAEFVQAALHEINVLSSIAEGGPINSKCVVQLIEHFKHTGPNGQHLCMVLEFLGDSLLRLIKYNRYKGLPLNKVREICKCILIGLDYLHRELGIIHTDLKPENILLFSTIDHSKDPCRSGLSPIIERPEGNINGGVTSLIEKRLKRRARRAVAKISLRDSMGGAGEAPKSDRNINGIDVRCKIVDFGNACWADKPLAEEIQTRQYRAPEVILKAGYSFSVDLWSFACIAFELATGDMLFTPKGGGQGFSEDEDHLALMMELLGKMPRKIAIAGAQSKDFFDRHGDLKRIRRLKFWPLEKLLINRYKFSEKDAGEFSEFLLPLLDFAPEKRPTAEQCLQHPWLNC 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0358 415 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0358 415 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 7 414 - -
Lal16g0358 415 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 7 414 - -
Lal16g0358 415 Pfam Protein kinase domain 251 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0358 415 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0358 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Lal16g0358 415 CDD STKc_SRPK 27 413 - -
Lal16g0358 415 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Lal16g0358 415 SUPERFAMILY Protein kinase-like (PK-like) 32 414 IPR011009 -
Lal16g0358 415 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Lal16g0358 415 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Lal16g0358 415 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0358 Lal-Chr16 2165793 2170170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0358 4 414 EF-hand Containing Proteins AT5G22840 51.183 4.70e-166 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lal16g0358 Pkinase 1.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0358 K08832 - gmx:100811724 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0358 16 2165793 2170170 Lal15g0300 15 2014692 2018983 LSH
Lal16g0358 16 2165793 2170170 Lal23g0095 23 937333 941358 PCT
Lal23g0095 23 937333 941358 Lal16g0358 16 2165793 2170170 PCT