Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0354 ATGCCGAAAGCAAGTTCTCATGCCCAACCCGCTGATAATCTGTTGAAGCGCAAGGGCGCTGGAACCGGGAGGAAGCAAAAGAAGAAAGCTGCTAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGCGCCTTCTTCGTTTTCATGGCTGAGTTCAGAGAACAGTTTAAAAAGGAGAATCCAAACAATAAATCTGTCGCCGCTGTTGGCAAAGCTAGTGGTAGCAAATGGAAAGCAATGACTGATGCTGACAAAGCTCCATACATTGCTAAGGCAGAGAAGAAGAAAGAGGAGTATGAGAAGACTCTTCGTGCCTACACTAATGGATTGGCTACTGGCAAAGACGGAGAAGATTCCGACAAGTCGAAGTCTGAAGTGAATGATGATGATGATGACGACGAGGATGACGAGGAGGAAGATGATGAGTAG 426 0.4671 MPKASSHAQPADNLLKRKGAGTGRKQKKKAAKDPNKPKRPPSAFFVFMAEFREQFKKENPNNKSVAAVGKASGSKWKAMTDADKAPYIAKAEKKKEEYEKTLRAYTNGLATGKDGEDSDKSKSEVNDDDDDDEDDEEEDDE 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0354 141 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 140 IPR031061 -
Lal16g0354 141 MobiDBLite consensus disorder prediction 105 141 - -
Lal16g0354 141 MobiDBLite consensus disorder prediction 123 141 - -
Lal16g0354 141 SMART hmgende2 36 107 IPR009071 -
Lal16g0354 141 Coils Coil 88 108 - -
Lal16g0354 141 MobiDBLite consensus disorder prediction 1 43 - -
Lal16g0354 141 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Lal16g0354 141 MobiDBLite consensus disorder prediction 20 34 - -
Lal16g0354 141 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 140 - -
Lal16g0354 141 CDD HMGB-UBF_HMG-box 37 95 - -
Lal16g0354 141 MobiDBLite consensus disorder prediction 57 77 - -
Lal16g0354 141 Pfam HMG (high mobility group) box 37 105 IPR009071 -
Lal16g0354 141 SUPERFAMILY HMG-box 24 106 IPR036910 -
Lal16g0354 141 Gene3D High mobility group box domain 21 123 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0354 Lal-Chr16 2145833 2147666 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lal16g0354 HMG_box 1.3e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0354 K25507 - gmx:100499992 133.265