Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0350 ATGATGCAAGAACCAAACTTGGGAATGATGGGTGGTGGTGGTTTAGGAGGAGACGGTGGCGACCACCAACACCGACAGCTGAAGGCTGAGATAGCCACTCACCCTTTATATGAGCAGCTTCTAGCTGCACATGTGGCATGTCTCCGAGTTGCAACTCCAATAGATCAGTTACCACTCATTGATGCTCAGTTATCTCACTCTCATCATCTTCTTCGCTCTTATTTCTCTCAACAAACTCATTCTCTTTCACCACACCATCGCCAAGACCTTGACAACTTCTTGGCACAATATTTGATAGTGTTGTGTACTTTCAAAGAACAGCTTCAGCAACATGTCAGAGTTCATGCCGTCGAAGCTGTAATGGCTTGCCGTGACATTGAAAATACTTTACAAGCTCTCACAGTAGAAGTGTATAGATCAGAGATAGTAGAAATTAGACAAATAAATGGAAATGGAAATGGAAATGATTGGAAAAATGTTAGAGTCTCAGGAGTGAGTTTAGGAGAAGGAAGTGGGGCAGCAATGTCAGATGAAGAAGAAGAAGAAGAAGAAATGGTGATGGAATTCAGTTTAGATGAGTGTAACGGTGAAGGTCATGACATTATGGGATTTGGACTTCCTACAGAATCTGAAAGGTCACTTATGGAAAGAGTTCGCCAAGAACTCAAGATTGAGCTCAAGCAGGGTTTTAAGTCAAAAATTGAAGATGTTAGAGAGGAAATATTGAGGAAAAGAAGAGCTGGGAAATTACCAGGTGACACAACTTCGGTGTTAAAGAACTGGTGGCAGCAACATGCCAAGTGGCCCTACCCTACTGAAGATGACAAGGCCAAACTTGTGGAAGAGACAGGGTTGCAGCTGAAGCAAATCAACAATTGGTTCATCAACCAAAGGAAACGCAACTGGCATAGCAACTCTCAATCTCTCACCTCTTTGAAATCCAAGCGCAAGAGGTAG 957 0.4295 MMQEPNLGMMGGGGLGGDGGDHQHRQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSHSHHLLRSYFSQQTHSLSPHHRQDLDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTVEVYRSEIVEIRQINGNGNGNDWKNVRVSGVSLGEGSGAAMSDEEEEEEEMVMEFSLDECNGEGHDIMGFGLPTESERSLMERVRQELKIELKQGFKSKIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSLTSLKSKRKR 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0350 318 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 3 136 - -
Lal16g0350 318 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 163 318 - -
Lal16g0350 318 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Lal16g0350 318 CDD homeodomain 244 305 IPR001356 GO:0003677
Lal16g0350 318 MobiDBLite consensus disorder prediction 1 23 - -
Lal16g0350 318 Gene3D - 240 313 - -
Lal16g0350 318 ProSiteProfiles ELK domain profile. 221 241 IPR005539 GO:0003677
Lal16g0350 318 SMART KNOX2_2 80 135 IPR005541 GO:0003677|GO:0005634
Lal16g0350 318 ProSiteProfiles 'Homeobox' domain profile. 241 304 IPR001356 GO:0003677
Lal16g0350 318 Pfam Homeobox KN domain 261 300 IPR008422 GO:0003677|GO:0006355
Lal16g0350 318 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 136 - -
Lal16g0350 318 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 163 318 - -
Lal16g0350 318 SMART HOX_1 243 308 IPR001356 GO:0003677
Lal16g0350 318 Pfam KNOX2 domain 84 134 IPR005541 GO:0003677|GO:0005634
Lal16g0350 318 Pfam KNOX1 domain 27 68 IPR005540 GO:0003677|GO:0005634
Lal16g0350 318 SUPERFAMILY Homeodomain-like 243 308 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0350 Lal-Chr16 2119042 2121615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0350 2 317 Homeobox Transcription Factor Family AT1G62990 69.632 6.38e-154 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lal16g0350 KNOX2 3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0350 - - gmx:100787023 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0350 16 2119042 2121615 Lal16g0350 16 2119042 2121615 ECH