Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0340 ATGGGAAGACAACCATGTTGTGACAAACTTGGGGTGAAGAAAGGTCCATGGACTGGTGAGGAAGACAAGAAACTGATGAACTTTATTCTAAACAATGGACAGTGTTGTTGGAGAGCAGTGCCTAAGCTTGCTGGGCTGAAACGTTGTGGCAAAAGTTGTCGTCTTCGTTGGACTAATTATCTTAGGCCTGACTTGAAGAGAGGCCTTCTCACTGAATCAGAAGAGCAACTTGTTATTGATCTCCATGCCCGTCTTGGCAATAGGTGGTTCAAGATTGCTGCACGGTTACCTGGAATGACAGACAACGAGATTAAAAATCACTGGAACACTCATATCAAGAAAAAGCTCCTTAAGATGGGTATTGATCCCGTTACTCATGAACCTCTTAATAAACATGTTTCATTCCCTGAAGAAAATATGCATATGCCGCCAAAAGCTGGCAATGATGTGGTTCTCAATTTAGAGGATAATTCAAATTCAAGCACATCCCTAGCTGAGAACTCTTATTGTGGAGAGTCCCTTTTGTTGGATAGCATTTGCAGTGATAAATCATTAATCAATAGCTTGTGGCTTGATGAAACTCTACTCAATGATGCATTATGGGACATAGCACCTAAAGTAGATAATATAAATAATAACATTGACATGGGCCTGCAACCTTGGGAGGATAATTATGCTTGGTTATTGGACTGTCAGGACTTTGGTATTCATGATTTTGTGACTGAGCTTGTGACAATATTGGAGAAGCTTCTGAAGATGAAGACAAAGAGGAAGGTAGTGCCAATGCCGAGAAATGGAGATGGAGATGTTAAGTTTGGCAAATTTACTTACATGGTGCACCTTGACCTTAAAATTAGGGTTTTGGTGCACCTTTTTTATTAA 882 0.4025 MGRQPCCDKLGVKKGPWTGEEDKKLMNFILNNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLTESEEQLVIDLHARLGNRWFKIAARLPGMTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKHVSFPEENMHMPPKAGNDVVLNLEDNSNSSTSLAENSYCGESLLLDSICSDKSLINSLWLDETLLNDALWDIAPKVDNINNNIDMGLQPWEDNYAWLLDCQDFGIHDFVTELVTILEKLLKMKTKRKVVPMPRNGDGDVKFGKFTYMVHLDLKIRVLVHLFY 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0340 293 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal16g0340 293 Gene3D - 71 116 - -
Lal16g0340 293 CDD SANT 16 61 IPR001005 -
Lal16g0340 293 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 236 - -
Lal16g0340 293 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal16g0340 293 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal16g0340 293 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Lal16g0340 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal16g0340 293 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 1 236 - -
Lal16g0340 293 Gene3D - 12 67 - -
Lal16g0340 293 CDD SANT 71 112 IPR001005 -
Lal16g0340 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal16g0340 293 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal16g0340 293 SMART sant 13 63 IPR001005 -
Lal16g0340 293 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0340 Lal-Chr16 2048086 2049792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0340 1 239 MYB Transcription Factor Family AT4G22680 55.682 1.38e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal16g0340 Myb_DNA-binding 5.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0340 K09422 - gmx:100800360 384.8