Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0337 ATGGCCGACGAAGCTAAAGCCAAAGGTAACGCCGCTTTCTCTTCCGGCGATTACGCCACCGCAATCCGTCACTTCTCCGACGCCATCGCTTTATCCCCCACCAACCACGTCCTCTATTCAAACCGATCTGCTGCATACGCTTCCATCCAAAACTACACCGAAGCCTTGACTGACGCTAAGAAAACCGTCGAGCTCAAGCCCGATTGGTCCAAGGGCTACAGCCGCCTCGGCGCCGCTCATATCGGCCTTGGCCAGCACAGCGACGCCGTTTCGGCTTACAAGAAGGGACTCGAAATCGACCCTAACAATGATGCCCTGAAATCCGGATTAGCAGATGCCCAGGCAGCCGCCGCCGCCGCTACGAGGTCCCGCTCAGCCCCGTCTCCATCAGCAAACCCCTTCGGCGATGCTTTCTCCGGGCCTGAGATGTGGGCCAAGCTCACCGCTGATGCAACCACTAGGGTTTATCTTCAACAACCTGATTTTGTGAAGATGATGCAGGATATTCAGAAAGATCCGAGTAATTTGAACTCGTACTTGAAGGATCCGAGAGTCATGCGAGCTATTGGTGTTTTGCTCAATATCAAGATTCAAACCGCTAACGATGACTTTGATGTGCCTGAAGCTGCGGCGGAGGCTTCTTCATCTTCTCCATCTCAATCGGAGAGGAAGAGAGCTGTTGAACCTGAGCCTGAGCCTGAGCCGGAACCTCAGCCGGAGCCTATGGAAATACCAGATGAGGAGAAGGAGGCCAAAGAGAAAAAGGCACAGGCTCAGAAGGAAAAGGAAGCCGGTAATGCTGCCTATAAGAAGAAGGATTTCGATACCGCGATTCAGCATTACTCAAAGGCTTTGGAGTTGGATGATGAGGACATTTCATATCTCACAAACCGTGCTGCTGTTTATCTGGAGATGGGAAAGTATGAGGAATGCATGAAAGATTGTGACAAGGCTGTTGAAAGAGGAAGAGAACTACGATCAGACTACAAGATGATAGCAAGAGCTTTGACAAGGAAAGGAAATGCCTTAGTCAAATTGGCAAAATGCTCAAAGGATTATGATCCTGCCATTGAGACTTACCAAAAAGCACTTACAGAGCACCGCAATCCAGACACCCTGAAGAAATTGAATGAAGCTGAAAAGGCCAAGAAAGAACTAGAACAGCAGGAATATTTTGATCCAAAGTTGGCTGATGAGGAGAGAGAAAAAGGGAATGAATTCTTCAAGCAGCAGAAGTATCCTGAGGCTATCAAGCATTACACAGAGTCCTTAAGAAGAAACCCAGAAGAGCCAAGGACATACAGCAACAGAGCTGCATGCTACACTAAACTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAGTGCATTGAGCTTGATCCTGCCTTCGTAAAGGGTTATACCAGGAAAGGTGCTGTACAGTTTTTCATGAAAGAATATGAGAAGGCTTTGGAAACATATCAGGAGGGGTTGAAACATGACCCTAACAACCAAGAGATGCTTGATGGCATTTCAAGATGTGTACAACAAATTAACAAGTTCAGCAGGGGGGATTTAAGTCCTGATGAATTGAAGGAGAGACAGGCCAAGGCAATGCAGGACCCAGAGATACAGAACATTCTCCAAGACCCTGTTATGAGACAGGTATTGGTTGATTTCCAGGAAAATCCCAAGTCTGCACAGGATCATATGAAGAATCCAATGGTGATGAATAAGATCCAAAAGCTGATCAGTGCTGGAATTGTCCAGATGAAATAA 1761 0.4753 MADEAKAKGNAAFSSGDYATAIRHFSDAIALSPTNHVLYSNRSAAYASIQNYTEALTDAKKTVELKPDWSKGYSRLGAAHIGLGQHSDAVSAYKKGLEIDPNNDALKSGLADAQAAAAAATRSRSAPSPSANPFGDAFSGPEMWAKLTADATTRVYLQQPDFVKMMQDIQKDPSNLNSYLKDPRVMRAIGVLLNIKIQTANDDFDVPEAAAEASSSSPSQSERKRAVEPEPEPEPEPQPEPMEIPDEEKEAKEKKAQAQKEKEAGNAAYKKKDFDTAIQHYSKALELDDEDISYLTNRAAVYLEMGKYEECMKDCDKAVERGRELRSDYKMIARALTRKGNALVKLAKCSKDYDPAIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEEREKGNEFFKQQKYPEAIKHYTESLRRNPEEPRTYSNRAACYTKLGAMPEGLKDAEKCIELDPAFVKGYTRKGAVQFFMKEYEKALETYQEGLKHDPNNQEMLDGISRCVQQINKFSRGDLSPDELKERQAKAMQDPEIQNILQDPVMRQVLVDFQENPKSAQDHMKNPMVMNKIQKLISAGIVQMK 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0337 586 PANTHER TPR REPEAT CONTAINING PROTEIN 1 585 IPR045248 GO:0006457|GO:0030544|GO:0051879
Lal16g0337 586 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Lal16g0337 586 ProSiteProfiles TPR repeat profile. 465 498 IPR019734 GO:0005515
Lal16g0337 586 Gene3D Tetratricopeptide repeat domain 255 391 IPR011990 GO:0005515
Lal16g0337 586 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Lal16g0337 586 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Lal16g0337 586 MobiDBLite consensus disorder prediction 242 267 - -
Lal16g0337 586 Coils Coil 369 389 - -
Lal16g0337 586 Pfam STI1 domain 141 194 IPR041243 -
Lal16g0337 586 Pfam STI1 domain 527 578 IPR041243 -
Lal16g0337 586 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Lal16g0337 586 SUPERFAMILY TPR-like 257 385 IPR011990 GO:0005515
Lal16g0337 586 Pfam Tetratricopeptide repeat 466 498 IPR001440 GO:0005515
Lal16g0337 586 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Lal16g0337 586 Gene3D - 131 198 - -
Lal16g0337 586 Coils Coil 244 268 - -
Lal16g0337 586 SMART tpr_5 70 103 IPR019734 GO:0005515
Lal16g0337 586 SMART tpr_5 333 370 IPR019734 GO:0005515
Lal16g0337 586 SMART tpr_5 397 430 IPR019734 GO:0005515
Lal16g0337 586 SMART tpr_5 465 498 IPR019734 GO:0005515
Lal16g0337 586 SMART tpr_5 292 325 IPR019734 GO:0005515
Lal16g0337 586 SMART tpr_5 258 291 IPR019734 GO:0005515
Lal16g0337 586 SMART tpr_5 431 464 IPR019734 GO:0005515
Lal16g0337 586 SMART tpr_5 36 69 IPR019734 GO:0005515
Lal16g0337 586 SMART tpr_5 2 35 IPR019734 GO:0005515
Lal16g0337 586 ProSiteProfiles TPR repeat profile. 397 430 IPR019734 GO:0005515
Lal16g0337 586 SUPERFAMILY TPR-like 396 509 IPR011990 GO:0005515
Lal16g0337 586 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 585 - -
Lal16g0337 586 MobiDBLite consensus disorder prediction 208 267 - -
Lal16g0337 586 Pfam Tetratricopeptide repeat 7 61 - -
Lal16g0337 586 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Lal16g0337 586 SMART CBM 150 189 IPR006636 -
Lal16g0337 586 SMART CBM 535 574 IPR006636 -
Lal16g0337 586 Pfam TPR repeat 265 306 - -
Lal16g0337 586 Pfam TPR repeat 404 445 - -
Lal16g0337 586 ProSiteProfiles TPR repeat profile. 258 291 IPR019734 GO:0005515
Lal16g0337 586 Gene3D - 517 586 - -
Lal16g0337 586 Gene3D Tetratricopeptide repeat domain 396 515 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0337 Lal-Chr16 2034963 2038387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0337 1 99 U-box Gene Family AT3G07370 26.263 4.39e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0337 K09553 - gmx:100816776 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0337 16 2034963 2038387 Lal15g0274 15 1858631 1863868 LSH