Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0334 ATGAACACTTTTTCACATCTTCCTCCTGGCTTTCGGTTTCATCCCACTGATGAAGAACTTGTTGATTACTACCTTAAGAACAAGATAGCATCTAAAAGGATTGAGCTAGATGTAATAAAAGATATCGATCTCTATAAAATTGAACCATGGGATCTTGAAGAATTATGCAAATTCGGTAGCAATGAACAAACTGAATGGTACTTCTTTAGTCATAAAGATAAGAAATACCCAACTGGCACACGCACCAATAGAGCTACAAAGGTAGGATTTTGGAAAGCAACGGGAAGAGACAAGGCAATATACTTGAAGTATTCACTGATTGGGATGAGAAAGACTCTTGTATTTTATCAAGGAAGAGCCCCAAATGGACAGAAATCTGACTGGATCATGCATGAATATCGGCTAGAAACTAATGAAAATGGATCTCCTCATCAGGAAGAAGGCTGGGTTGTATGTAAAGTGTTCAAGAAAAGAATGACAACAGTGAGGAAAATGGGGGAATATGAATCACCATGCAGTTGGTATGATGATCAAGTCTCCGTCATGCAAGAGCTTGATGCTCTTTCTCGCCCTAATTATGCATCACAACACTACCCTTACAAACAAGAGTTGGAATTAATGCAATACAATATGCCCCATGATGCTAATTTCCTCCAACTTCCACAACTTAACAGCAGCAAAGTTCCTCAATCTTATGCCTATGGTACCAATAATAATAACAATGGAAGCACTTTGCAGTCCTCGTCACTCACTCAAGAAGAACGCACACACTATTGCCAGCAGCAACCAAGTGCGCACATACTTCATAGTACTAGCAATGATCAAGTAGTGGAGCAAGTGATGGATTGGCGAGTACTCGACAAATTTGTTGCTTCTCAGCTTAGTCATAATGATCAAGATCATGTTTCCAAGGGAACAAATTATTCAGATGTGGCTGAACAAATTACTATGCAAGCAAATGGATCCGAAAACCTGGAAATTGGACAGGAGCATGCATCAACGTCCACCTCCAGTTGCCAGATTGACCTGTGGAAATGA 1038 0.3998 MNTFSHLPPGFRFHPTDEELVDYYLKNKIASKRIELDVIKDIDLYKIEPWDLEELCKFGSNEQTEWYFFSHKDKKYPTGTRTNRATKVGFWKATGRDKAIYLKYSLIGMRKTLVFYQGRAPNGQKSDWIMHEYRLETNENGSPHQEEGWVVCKVFKKRMTTVRKMGEYESPCSWYDDQVSVMQELDALSRPNYASQHYPYKQELELMQYNMPHDANFLQLPQLNSSKVPQSYAYGTNNNNNGSTLQSSSLTQEERTHYCQQQPSAHILHSTSNDQVVEQVMDWRVLDKFVASQLSHNDQDHVSKGTNYSDVAEQITMQANGSENLEIGQEHASTSTSSCQIDLWK 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0334 345 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Lal16g0334 345 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 5 327 - -
Lal16g0334 345 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 327 - -
Lal16g0334 345 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Lal16g0334 345 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Lal16g0334 345 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0334 Lal-Chr16 2019732 2025386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0334 1 345 NAC Transcription Factor Family AT1G12260 57.062 6.26e-136 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal16g0334 NAM 1.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0334 - - pvy:116105603 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0334 16 2019732 2025386 Lal16g0334 16 2019732 2025386 ECH
Lal16g0334 16 2019732 2025386 Lal15g0271 15 1846100 1851591 LSH