Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0316 ATGGTGAAAATAGCTTTTGGCACCTTTGATGACTCTTTTAGTGTTACCTCTCTCAAGGCTTATCTAGCAGAGTTCCATGCCACTCTCATTTTCGTGTTTGCTGGTGTTGGATCAGCCATTGCTTATAATGAGGTTACAAAAGATGCAGCTTTGGATCCAGCTGGTCTAGTAGCAGTAGCATTGGCACATGCATTTGCACTATTTGTTGGAGTCTCTATAGCAGCCAACATATCTGGTGGTCATTTGAACCCAGCTGTTACTTTTGGATTGGCTATTGGAGGAAACATTACTCTCCTCACTGGTCTCTTCTACTGGATTGCCCAATTACTTGCCTCCATTGTTGCATCTCTTCTCCTCTCTTTTGTCACCTCTAAGAGTATTCCAACCCATGGACTAGCTTCTGGAGTGAACGCATTTGGAGGTGTAGTGTTTGAGGTTATTATTACATTTGGGTTGGTGTACACTGTGTATGCCACTGCAGCTGACCCTAAAAAGGGCTCATTGGGAACCATTGCACCCATTGCTATTGGGTTCGTTGTGGGTGCAAACATCTTAGCTGCAGGTCCATTCAGTGGTGGTTCAATGAACCCAGCTCGATCATTTGGCCCAGCTGTGGTTAGTGGAAACTTTACTGAAAACTGGATCTATTGGGTTGGTCCATTGATTGGTGGAGGCTTAGCTGGCTTGATCTATAGTGACATCTTCATTGGTTCCTATGCTCCTGCATCTGAAACATACCCTTAA 744 0.4449 MVKIAFGTFDDSFSVTSLKAYLAEFHATLIFVFAGVGSAIAYNEVTKDAALDPAGLVAVALAHAFALFVGVSIAANISGGHLNPAVTFGLAIGGNITLLTGLFYWIAQLLASIVASLLLSFVTSKSIPTHGLASGVNAFGGVVFEVIITFGLVYTVYATAADPKKGSLGTIAPIAIGFVVGANILAAGPFSGGSMNPARSFGPAVVSGNFTENWIYWVGPLIGGGLAGLIYSDIFIGSYAPASETYP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0316 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal16g0316 247 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal16g0316 247 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal16g0316 247 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal16g0316 247 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal16g0316 247 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal16g0316 247 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal16g0316 247 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Lal16g0316 247 TIGRFAM MIP: MIP family channel proteins 23 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal16g0316 247 Pfam Major intrinsic protein 14 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal16g0316 247 PANTHER AQUAPORIN-8 1 244 IPR034294 -
Lal16g0316 247 PANTHER AQUAPORIN TIP2-2-RELATED 1 244 - -
Lal16g0316 247 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Lal16g0316 247 SUPERFAMILY Aquaporin-like 14 236 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0316 Lal-Chr16 1901771 1904254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0316 1 245 Major Intrinsic Protein MIP AT5G47450 78.455 1.68e-133 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0316 K09873 - gmx:100527333 400.208