Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0310 ATGGATGGACAAAGTAGCTACGATTCTGATTTGGCACTTTTAGATTCAATCCGTCGCCACTTACTTGATGAATCTGACCCATTTATATTCGGAGTCCCGTCTTCTAATTCGGGTCAAACACCGTCTTATTGTCGGAGCTCCAGTTTCAACAGCTTGTACCCATGTTTGTGTGACAATTGGGGCGAATTGCCACTTAAGGAAGATGATTCAGAAGATATGGTACTTTACGGTGTTCTCCGCGATGCTGTTAATGTCGGGTGGGTCCCATCTTTAGAAACCGGGTCACCCGACAGCTCCACGTCAAGTTTCCAACCTCCGGTAATGGTCAAATCGGAGCCGGATATGTTTCCGGCAGTTTATAGTCAACCTGAGTTAATTGCTACCGTTCCTGAGAATCCTAAAGTGAAGGCTATGCCGGCGGTGGTTCCGTCGAAGGGGAAGCATTACCGCGGTGTGAGGCAAAGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGTGACCCTTCGAAAAACGGGGCGCGGGTTTGGCTCGGAACATATGAAACGGCTGAGGATGCAGCGTTGGCTTACGATAGAGCCGCGTATCGGATGCGAGGTGCGCGGGCTATGTTGAATTTTCCTCTCCGGGTTAATTCAGGTGAACCGGACCCGGTTCGAGTGACGTCAAAGCGGGTATCGCCGGAGCCTTCATCATCGTCGGAAAATTTGTCGGCGGCAAAAAGAAAGAAGAAAACGGTAGGGCCAATGGTGCAAGTGGTGACAAGTCAAGTGGCACAGTACACACGTGGAGGGCAATTATTAGTTAGCTAA 807 0.5068 MDGQSSYDSDLALLDSIRRHLLDESDPFIFGVPSSNSGQTPSYCRSSSFNSLYPCLCDNWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLETGSPDSSTSSFQPPVMVKSEPDMFPAVYSQPELIATVPENPKVKAMPAVVPSKGKHYRGVRQRPWGKFAAEIRDPSKNGARVWLGTYETAEDAALAYDRAAYRMRGARAMLNFPLRVNSGEPDPVRVTSKRVSPEPSSSSENLSAAKRKKKTVGPMVQVVTSQVAQYTRGGQLLVS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0310 268 Gene3D AP2/ERF domain 147 209 IPR036955 GO:0003700|GO:0006355
Lal16g0310 268 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700|GO:0006355
Lal16g0310 268 PRINTS Ethylene responsive element binding protein signature 172 188 IPR001471 GO:0003700|GO:0006355
Lal16g0310 268 PANTHER DNA-BINDING DOMAIN 32 258 IPR044808 GO:0003700|GO:0009873
Lal16g0310 268 SMART rav1_2 148 212 IPR001471 GO:0003700|GO:0006355
Lal16g0310 268 MobiDBLite consensus disorder prediction 211 245 - -
Lal16g0310 268 ProSiteProfiles AP2/ERF domain profile. 148 206 IPR001471 GO:0003700|GO:0006355
Lal16g0310 268 CDD AP2 147 206 IPR001471 GO:0003700|GO:0006355
Lal16g0310 268 SUPERFAMILY DNA-binding domain 148 208 IPR016177 GO:0003677
Lal16g0310 268 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 32 258 - -
Lal16g0310 268 Pfam AP2 domain 148 198 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0310 Lal-Chr16 1860820 1861626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0310 9 267 AP2-EREBP Transcription Factor Family AT4G17500 54.044 6.35e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal16g0310 AP2 4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0310 K09286 - gmx:100819649 327.405