Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0302 ATGAAGCCACAGAATATGAAACCTTTGAACTTATTCTCTCAACAACTTTCTTATCTTCCAAGCTTGGTAAATTCCAGTTTAATTAAGCCTGCAAGTGGTAGTGCACAAATGACAATCTTTTATGGTGGGGAAGTTATTGTGCTTGATGATTATCCTGCTGATAAAGCCAAAGAGATCATGTCTTTTGCCACCAAGGGAAACTCACAAATCCAGAACAATAACAACAACAATAACTATGCTTACACATTTATTCAGACTCACCCTACTTCTCCATTTCCATTTGATGTGAAGAACATCCCTGAAAGTGCCAATAATTTTGCTCACCTTCAAGCACCATCAAGATATGTTGCTTGTGATCTACCACTTACTAGGAAAGCTTCACTGTATCGGTTCATGGAGAAGAGGAAGGATAGAATTAATGGCAGAACACCATATCAAAAAAGTAATCCCATAGCAGCCCCTTATCAGCCAGATGAATCCATATCATGGCTAGCCTTGTCACCTCATTCTCCACAAGACAAATCTGAGAGTTGCTCCAGTTTTGTGTAA 549 0.3898 MKPQNMKPLNLFSQQLSYLPSLVNSSLIKPASGSAQMTIFYGGEVIVLDDYPADKAKEIMSFATKGNSQIQNNNNNNNYAYTFIQTHPTSPFPFDVKNIPESANNFAHLQAPSRYVACDLPLTRKASLYRFMEKRKDRINGRTPYQKSNPIAAPYQPDESISWLALSPHSPQDKSESCSSFV 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0302 182 PANTHER PROTEIN TIFY 10A 3 167 - -
Lal16g0302 182 SMART tify_2 30 65 IPR010399 -
Lal16g0302 182 Pfam tify domain 32 63 IPR010399 -
Lal16g0302 182 Pfam Jas motif 121 146 IPR018467 -
Lal16g0302 182 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 3 167 IPR040390 -
Lal16g0302 182 ProSiteProfiles Tify domain profile. 30 65 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0302 Lal-Chr16 1821764 1827263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0302 4 167 Tify Gene Family AT1G19180 33.690 6.37e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lal16g0302 tify 8.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0302 K13464 - gmx:100306332 176.792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0302 16 1821764 1827263 Lal23g1247 23 13626548 13632376 LSH